Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions Metabolic enzymeTransmemebrane
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000135587 Gene ID 6610 Accession 11121
Symbol SMPD2 Alias ISC1;NSMASE;NSMASE1 Full Name sphingomyelin phosphodiesterase 2
Status Confidence Length 3196 bases Strand Plus strand
Position 6 : 109440724 - 109443919 RNA binding domain Exo_endo_phos
Summary This gene encodes a protein which was initially identified as a sphingomyelinase based on sequence similarity between bacterial sphingomyelinases and a yeast protein. Subsequent studies showed that its biological function is less likely to be as a sphingomyelinase and instead as a lysophospholipase. [provided by RefSeq, Oct 2009]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000258052 Exo_endo_phos PF03372 4.4e-12 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0004767enables sphingomyelin phosphodiesterase activity2IBA,IDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005783is_active_in endoplasmic reticulum1IBAHomo_sapiens(9606)Component
GO:0005886located_in plasma membrane2ISS,TASHomo_sapiens(9606)Component
GO:0005901is_active_in caveola1IBAHomo_sapiens(9606)Component
GO:0006684involved_in sphingomyelin metabolic process1IBAHomo_sapiens(9606)Process
GO:0006685involved_in sphingomyelin catabolic process1IDAHomo_sapiens(9606)Process
GO:0008081enables phosphoric diester hydrolase activity1IDAHomo_sapiens(9606)Function
GO:0030149involved_in sphingolipid catabolic process1IBAHomo_sapiens(9606)Process
GO:0046513involved_in ceramide biosynthetic process1IBAHomo_sapiens(9606)Process
GO:0046872enables metal ion binding1IEAHomo_sapiens(9606)Function
GO:0071944is_active_in cell periphery1IBAHomo_sapiens(9606)Component

Expression