RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	mRNA
Moonlighting functions	N.A.
Localizations	N.A.
BulkPerturb-seq

Description

Ensembl ID	ENSG00000132972	Gene ID	56163	Accession	10060
Symbol	RNF17	Alias		Full Name
Status	Confidence	Length	115753 bases	Strand	Plus strand
Position	13 : 24764169 - 24879921	RNA binding domain	TUDOR
Summary

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000255324	TUDOR	PF00567	5.3e-82	1
ENSP00000255324	TUDOR	PF00567	5.3e-82	2
ENSP00000255324	TUDOR	PF00567	5.3e-82	3
ENSP00000255324	TUDOR	PF00567	5.3e-82	4
ENSP00000255324	TUDOR	PF00567	5.3e-82	5
ENSP00000388892	TUDOR	PF00567	3.4e-69	1
ENSP00000388892	TUDOR	PF00567	3.4e-69	2
ENSP00000388892	TUDOR	PF00567	3.4e-69	3
ENSP00000388892	TUDOR	PF00567	3.4e-69	4
ENSP00000344776	TUDOR	PF00567	7.5e-48	1
ENSP00000344776	TUDOR	PF00567	7.5e-48	2
ENSP00000344776	TUDOR	PF00567	7.5e-48	3
ENSP00000255325	TUDOR	PF00567	7.5e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal
37428816	Two RNA binding proteins, ADAD2 and RNF17, interact to form a heterogeneous population of novel meiotic germ cell granules with developmentally dependent organelle association.	G Lauren Chukrallah	2023-07-01	PLoS genetics

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RNF17-201	ENST00000255324	5102	1623aa	ENSP00000255324
RNF17-203	ENST00000255326	1490	No protein	-
RNF17-202	ENST00000255325	2134	653aa	ENSP00000255325
RNF17-205	ENST00000418120	2826	855aa	ENSP00000388892
RNF17-204	ENST00000339524	2203	633aa	ENSP00000344776

Gene Model

Click here to download ENSG00000132972's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID
13213	Diabetic Nephropathies	6.9000000E-005	16775037
13214	Diabetic Nephropathies	8.9000000E-005	16775037
14887	Hemoglobin A, Glycosylated	2.5870000E-005	19875614

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000132972's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005634	located_in nucleus	1	IEA	Homo_sapiens(9606)	Component
GO:0005737	located_in cytoplasm	1	IEA	Homo_sapiens(9606)	Component
GO:0007286	involved_in spermatid development	1	IEA	Homo_sapiens(9606)	Process
GO:0042802	enables identical protein binding	1	IEA	Homo_sapiens(9606)	Function
GO:0046872	enables metal ion binding	1	IEA	Homo_sapiens(9606)	Function

Expression