RBPWorld - a comprehensive database of RNA Binding Proteins

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	Cancer Disease
Drug	N.A.
Main interacting RNAs	mRNA
Moonlighting functions	N.A.
Localizations	N.A.
BulkPerturb-seq	N.A.

Description

Ensembl ID	ENSG00000130810	Gene ID	56342	Accession	9227
Symbol	PPAN	Alias		Full Name
Status	Confidence	Length	5651 bases	Strand	Plus strand
Position	19 : 10106362 - 10112012	RNA binding domain	Brix
Summary

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000253107	Brix	PF04427	4.5e-44	1
ENSP00000377382	Brix	PF04427	5.7e-40	1
ENSP00000410485	Brix	PF04427	9.6e-30	1
ENSP00000415988	Brix	PF04427	4e-14	1

Showing 1 to 4 of 4 entries

RNA binding proteomes (RBPomes)

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Pubmed ID	Full Name	Cell	Author	Time	Doi
22658674	RIC_PMID22658674_Hs_HeLa	HeLa	Alfredo Castello?	2012 Jun 8	doi: 10.1016/j.cell.2012.04.031.?Epub 2012 May 31
22681889	RIC_PMID22681889_Hs_HEK293	HEK293	Alexander G Baltz	2012 Jun 8	doi: 10.1016/j.molcel.2012.05.021
25173706	Pclap_PMID25173706_Hs_HEK293	HEK293	Katharina Kramer	2014 Oct;11	doi: 10.1038/nmeth.3092.?Epub 2014 Aug 31
27040163	serIC_PMID27040163_Hs_K562	K562	Thomas Conrad?	2016 Apr 4	doi: 10.1038/ncomms11212
27040163	serIC_PMID27040163_Hs_K562.1	K562	Thomas Conrad?	2016 Apr 4	doi: 10.1038/ncomms11212
29431736	RICK_PMID29431736_Hs_HeLa.RICK	HeLa	Xichen Bao	2018 Mar	doi: 10.1038/nmeth.4595.?Epub 2018 Feb 12
29636419	CARIC_PMID29636419_Hela_human	Hela	Xichen Bao	2018 Apr 24	doi: 10.1073/pnas.1718406115.?Epub 2018 Apr 10
29636419	CARIC_PMID29636419_Hs_CARIC		Rongbing Huang	2018 Apr 24	doi: 10.1073/pnas.1718406115
30352994	eRIC_PMID30352994_Hs_JURKAT.2018	JURKAT	Joel I Perez-Perri	2018 Oct 23	doi: 10.1038/s41467-018-06557-8
30352994	RIC_PMID30352994_Hs_JURKAT.2018	JURKAT	Joel I Perez-Perri	2018 Oct 23	doi: 10.1038/s41467-018-06557-8

Showing 1 to 10 of 24 entries

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Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
PPAN-201	ENST00000253107	2302	473aa	ENSP00000253107
PPAN-202	ENST00000393793	1575	420aa	ENSP00000377382
PPAN-203	ENST00000430370	594	97aa	ENSP00000415988
PPAN-204	ENST00000444703	757	208aa	ENSP00000415467
PPAN-205	ENST00000446223	844	210aa	ENSP00000410485
PPAN-206	ENST00000466025	523	No protein	-
PPAN-207	ENST00000468881	627	No protein	-
PPAN-208	ENST00000486482	1017	No protein	-

Showing 1 to 8 of 8 entries

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Gene Model

Click here to download ENSG00000130810's gene model file

Phenotypes

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ensgID	Trait	pValue	Pubmed ID
98704	Narcolepsy	4E-10	24204295

Showing 1 to 1 of 1 entries

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GWAS

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ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
ENSG00000130810	rs1551570	19	10107354	Narcolepsy	24204295	1.32	EFO_0000614

Showing 1 to 1 of 1 entries

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Protein-Protein Interaction (PPI)

Click here to download ENSG00000130810's PPI file

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000130810	homo_sapiens	ENSP00000253107	97.8858	97.2516	nomascus_leucogenys	ENSNLEP00000014648	97.8858	97.2516
ENSG00000130810	homo_sapiens	ENSP00000253107	99.7886	99.3658	pan_paniscus	ENSPPAP00000033808	99.7886	99.3658
ENSG00000130810	homo_sapiens	ENSP00000253107	98.3087	97.0402	pongo_abelii	ENSPPYP00000031569	98.3087	97.0402
ENSG00000130810	homo_sapiens	ENSP00000253107	99.7886	99.1543	pan_troglodytes	ENSPTRP00000041462	99.7886	99.1543
ENSG00000130810	homo_sapiens	ENSP00000253107	88.3721	87.7378	gorilla_gorilla	ENSGGOP00000005313	99.5238	98.8095
ENSG00000130810	homo_sapiens	ENSP00000253107	76.1099	62.5793	ornithorhynchus_anatinus	ENSOANP00000010755	73.4694	60.4082
ENSG00000130810	homo_sapiens	ENSP00000253107	78.4355	65.7505	sarcophilus_harrisii	ENSSHAP00000010794	47.7477	40.0257
ENSG00000130810	homo_sapiens	ENSP00000253107	76.3214	63.2135	notamacropus_eugenii	ENSMEUP00000007288	48.1976	39.9199
ENSG00000130810	homo_sapiens	ENSP00000253107	68.9218	63.6364	dasypus_novemcinctus	ENSDNOP00000030859	73.5892	67.9458
ENSG00000130810	homo_sapiens	ENSP00000253107	83.0867	73.7844	echinops_telfairi	ENSETEP00000015669	83.9744	74.5726

Showing 1 to 10 of 191 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000027	involved_in ribosomal large subunit assembly	1	IBA	Homo_sapiens(9606)	Process
GO:0003723	enables RNA binding	1	HDA	Homo_sapiens(9606)	Function
GO:0005634	located_in nucleus	1	IDA	Homo_sapiens(9606)	Component
GO:0005730	located_in nucleolus	1	IEA	Homo_sapiens(9606)	Component
GO:0006364	involved_in rRNA processing	1	IEA	Homo_sapiens(9606)	Process
GO:0019843	enables rRNA binding	1	IBA	Homo_sapiens(9606)	Function
GO:0030687	part_of preribosome, large subunit precursor	1	IBA	Homo_sapiens(9606)	Component

Showing 1 to 7 of 7 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression