RBP Type
Canonical_RBPs
Diseases
Disease
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
Transmemebrane
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000127838 Gene ID
25953
Accession
9153
Symbol
PNKD
Alias
R1;MR1;PDC;DYT8;FPD1;MR-1;BRP17;MR-1S;PKND1;PNKD1;FKSG19;TAHCCP2;KIPP1184
Full Name
PNKD metallo-beta-lactamase domain containing
Status
Confidence
Length
76402 bases
Strand
Plus strand
Position
2 : 218270392 - 218346793
RNA binding domain
Lactamase_B
Summary
This gene is thought to play a role in the regulation of myofibrillogenesis. Mutations in this gene have been associated with the movement disorder paroxysmal non-kinesigenic dyskinesia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2010]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000258362
Lactamase_B
PF00753
1.1e-09
1
ENSP00000273077
Lactamase_B
PF00753
1.4e-09
1
ENSP00000508635
Lactamase_B
PF00753
1.5e-09
1
ENSP00000510415
Lactamase_B
PF00753
2.1e-09
1
ENSP00000508450
Lactamase_B
PF00753
5.9e-09
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
PNKD-217
ENST00000691799
2203
No protein
-
PNKD-201
ENST00000248451
758
142aa
ENSP00000248451
PNKD-206
ENST00000472650
1235
No protein
-
PNKD-211
ENST00000688179
2832
344aa
ENSP00000508635
PNKD-214
ENST00000689816
2919
373aa
ENSP00000508450
PNKD-209
ENST00000685415
3100
424aa
ENSP00000510415
PNKD-204
ENST00000436005
2974
382aa
ENSP00000414400
PNKD-203
ENST00000273077
2987
385aa
ENSP00000273077
PNKD-205
ENST00000469689
1372
No protein
-
PNKD-218
ENST00000692260
1630
No protein
-
PNKD-208
ENST00000684905
3719
No protein
-
PNKD-210
ENST00000687736
2753
325aa
ENSP00000509627
PNKD-215
ENST00000690891
3106
78aa
ENSP00000509744
PNKD-216
ENST00000691220
2580
258aa
ENSP00000509580
PNKD-207
ENST00000494954
248
No protein
-
PNKD-202
ENST00000258362
2991
361aa
ENSP00000258362
PNKD-220
ENST00000693423
2308
56aa
ENSP00000508705
PNKD-219
ENST00000692295
2601
265aa
ENSP00000509392
PNKD-212
ENST00000689098
3625
No protein
-
PNKD-213
ENST00000689693
3758
No protein
-
PNKD-221
ENST00000693556
2255
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
62041 Inflammatory Bowel Diseases 4E-12 23128233 80107 Colitis, Ulcerative 2E-8 26192919 94552 Crohn Disease 4E-9 26192919 100689 Inflammatory Bowel Diseases 2E-7 28067908
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0004416 enables hydroxyacylglutathione hydrolase activity 1 IEA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005634 located_in nucleus 1 IEA Homo_sapiens(9606) Component GO:0005739 is_active_in mitochondrion 2 IBA,IDA Homo_sapiens(9606) Component GO:0016020 located_in membrane 1 IDA Homo_sapiens(9606) Component GO:0019243 involved_in methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione 1 IEA Homo_sapiens(9606) Process GO:0032225 involved_in regulation of synaptic transmission, dopaminergic 1 IEA Homo_sapiens(9606) Process GO:0042053 involved_in regulation of dopamine metabolic process 1 IEA Homo_sapiens(9606) Process GO:0046872 enables metal ion binding 1 IEA Homo_sapiens(9606) Function GO:0046929 involved_in negative regulation of neurotransmitter secretion 1 IMP Homo_sapiens(9606) Process GO:0050884 involved_in neuromuscular process controlling posture 1 IEA Homo_sapiens(9606) Process GO:0099523 located_in presynaptic cytosol 1 IEA Homo_sapiens(9606) Component
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