RBP Type
Non-canonical_RBPs
Diseases
Disease
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
Metabolic enzyme
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000125450 Gene ID
79902
Accession
8734
Symbol
NUP85
Alias
Nup75;FROUNT;NPHS17
Full Name
nucleoporin 85
Status
Confidence
Length
30100 bases
Strand
Plus strand
Position
17 : 75205659 - 75235758
RNA binding domain
N.A.
Summary
This gene encodes a protein component of the Nup107-160 subunit of the nuclear pore complex. Nuclear pore complexes are embedded in the nuclear envelope and promote bidirectional transport of macromolecules between the cytoplasm and nucleus. The encoded protein can also bind to the C-terminus of chemokine (C-C motif) receptor 2 (CCR2) and promote chemotaxis of monocytes, thereby participating in the inflammatory response. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
NUP85-222
ENST00000583569
553
120aa
ENSP00000462487
NUP85-201
ENST00000245544
2133
656aa
ENSP00000245544
NUP85-224
ENST00000583948
1197
No protein
-
NUP85-219
ENST00000582833
453
No protein
-
NUP85-211
ENST00000579324
2010
544aa
ENSP00000463382
NUP85-202
ENST00000449421
1287
No protein
-
NUP85-204
ENST00000577208
572
No protein
-
NUP85-221
ENST00000583548
562
No protein
-
NUP85-210
ENST00000579298
1890
611aa
ENSP00000462749
NUP85-216
ENST00000581104
2233
169aa
ENSP00000461919
NUP85-208
ENST00000578830
922
100aa
ENSP00000462920
NUP85-223
ENST00000583877
575
191aa
ENSP00000463715
NUP85-205
ENST00000577561
524
No protein
-
NUP85-212
ENST00000579557
817
272aa
ENSP00000463496
NUP85-206
ENST00000577645
869
No protein
-
NUP85-220
ENST00000583070
907
302aa
ENSP00000463542
NUP85-215
ENST00000580879
583
19aa
ENSP00000463377
NUP85-217
ENST00000581335
566
No protein
-
NUP85-203
ENST00000540768
1926
259aa
ENSP00000445855
NUP85-218
ENST00000582681
595
No protein
-
NUP85-207
ENST00000578294
385
No protein
-
NUP85-214
ENST00000579900
528
114aa
ENSP00000463437
NUP85-209
ENST00000578987
388
46aa
ENSP00000464544
NUP85-213
ENST00000579838
373
98aa
ENSP00000462364
NUP85-225
ENST00000584155
300
18aa
ENSP00000464433
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
24904 Waist Circumference 9.2210000E-005 - 24954 Waist Circumference 9.2210000E-005 -
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000776 colocalizes_with kinetochore 1 IDA Homo_sapiens(9606) Component GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005635 located_in nuclear envelope 2 IDA,TAS Homo_sapiens(9606) Component GO:0005643 part_of nuclear pore 1 NAS Homo_sapiens(9606) Component GO:0005654 located_in nucleoplasm 1 IDA Homo_sapiens(9606) Component GO:0005819 located_in spindle 1 IEA Homo_sapiens(9606) Component GO:0005829 located_in cytosol 2 IDA,TAS Homo_sapiens(9606) Component GO:0006406 involved_in mRNA export from nucleus 1 IBA Homo_sapiens(9606) Process GO:0006606 involved_in protein import into nucleus 1 IBA Homo_sapiens(9606) Process GO:0006913 involved_in nucleocytoplasmic transport 1 NAS Homo_sapiens(9606) Process GO:0016020 located_in membrane 1 HDA Homo_sapiens(9606) Component GO:0017056 enables structural constituent of nuclear pore 1 IBA Homo_sapiens(9606) Function GO:0030032 involved_in lamellipodium assembly 1 IEA Homo_sapiens(9606) Process GO:0031080 part_of nuclear pore outer ring 3 IBA,IDA,NAS Homo_sapiens(9606) Component GO:0031965 located_in nuclear membrane 1 IEA Homo_sapiens(9606) Component GO:0045893 involved_in positive regulation of DNA-templated transcription 1 IBA Homo_sapiens(9606) Process GO:0048246 involved_in macrophage chemotaxis 1 IEA Homo_sapiens(9606) Process GO:0072006 involved_in nephron development 1 IMP Homo_sapiens(9606) Process
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