RBP Type
Canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
E3 ligase
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000111671 Gene ID
84727
Accession
29522
Symbol
SPSB2
Alias
SSB2;GRCC9
Full Name
splA/ryanodine receptor domain and SOCS box containing 2
Status
Confidence
Length
11353 bases
Strand
Minus strand
Position
12 : 6870935 - 6882287
RNA binding domain
SPRY
Summary
This gene encodes a member of a subfamily of proteins containing a central SPRY (repeats in splA and RyR) domain and a C-terminal suppressor of cytokine signaling (SOCS) box. This protein plays a role in cell signaling. This gene is present in a gene-rich cluster on chromosome 12p13 in the vicinity of the CD4 antigen and triosephosphate isomerase genes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000431037
SPRY
PF00622
3.1e-19
1
ENSP00000428338
SPRY
PF00622
3.2e-19
1
ENSP00000430872
SPRY
PF00622
3.2e-19
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
SPSB2-204
ENST00000523102
1205
263aa
ENSP00000430872
SPSB2-205
ENST00000524270
1203
263aa
ENSP00000428338
SPSB2-203
ENST00000519357
1496
267aa
ENSP00000431037
SPSB2-201
ENST00000432205
679
82aa
ENSP00000428458
SPSB2-202
ENST00000437851
404
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
71333 Colorectal Neoplasms 4E-11 26965516
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005829 located_in cytosol 2 IDA,TAS Homo_sapiens(9606) Component GO:0006511 involved_in ubiquitin-dependent protein catabolic process 1 IDA Homo_sapiens(9606) Process GO:0016567 involved_in protein ubiquitination 2 IDA,IEA Homo_sapiens(9606) Process GO:0019005 part_of SCF ubiquitin ligase complex 1 IBA Homo_sapiens(9606) Component GO:0035556 involved_in intracellular signal transduction 1 IEA Homo_sapiens(9606) Process GO:0043161 involved_in proteasome-mediated ubiquitin-dependent protein catabolic process 1 IBA Homo_sapiens(9606) Process GO:1990756 enables ubiquitin ligase-substrate adaptor activity 1 IPI Homo_sapiens(9606) Function
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