Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions E3 ligase
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000111671 Gene ID 84727 Accession 29522
Symbol SPSB2 Alias SSB2;GRCC9 Full Name splA/ryanodine receptor domain and SOCS box containing 2
Status Confidence Length 11353 bases Strand Minus strand
Position 12 : 6870935 - 6882287 RNA binding domain SPRY
Summary This gene encodes a member of a subfamily of proteins containing a central SPRY (repeats in splA and RyR) domain and a C-terminal suppressor of cytokine signaling (SOCS) box. This protein plays a role in cell signaling. This gene is present in a gene-rich cluster on chromosome 12p13 in the vicinity of the CD4 antigen and triosephosphate isomerase genes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000431037 SPRY PF00622 3.1e-19 1
ENSP00000428338 SPRY PF00622 3.2e-19 1
ENSP00000430872 SPRY PF00622 3.2e-19 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
SPSB2-204 ENST00000523102 1205 263aa ENSP00000430872
SPSB2-205 ENST00000524270 1203 263aa ENSP00000428338
SPSB2-203 ENST00000519357 1496 267aa ENSP00000431037
SPSB2-201 ENST00000432205 679 82aa ENSP00000428458
SPSB2-202 ENST00000437851 404 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
71333Colorectal Neoplasms4E-1126965516

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005829located_in cytosol2IDA,TASHomo_sapiens(9606)Component
GO:0006511involved_in ubiquitin-dependent protein catabolic process1IDAHomo_sapiens(9606)Process
GO:0016567involved_in protein ubiquitination2IDA,IEAHomo_sapiens(9606)Process
GO:0019005part_of SCF ubiquitin ligase complex1IBAHomo_sapiens(9606)Component
GO:0035556involved_in intracellular signal transduction1IEAHomo_sapiens(9606)Process
GO:0043161involved_in proteasome-mediated ubiquitin-dependent protein catabolic process1IBAHomo_sapiens(9606)Process
GO:1990756enables ubiquitin ligase-substrate adaptor activity1IPIHomo_sapiens(9606)Function

Expression