RBP Type
Non-canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
TF
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000108511 Gene ID
3216
Accession
5117
Symbol
HOXB6
Alias
HOX2;HU-2;HOX2B;Hox-2.2
Full Name
homeobox B6
Status
Confidence
Length
9242 bases
Strand
Minus strand
Position
17 : 48595751 - 48604992
RNA binding domain
N.A.
Summary
This gene is a member of the Antp homeobox family and encodes a protein with a homeobox DNA-binding domain. It is included in a cluster of homeobox B genes located on chromosome 17. The encoded protein functions as a sequence-specific transcription factor that is involved in development, including that of lung and skin, and has been localized to both the nucleus and cytoplasm. Altered expression of this gene or a change in the subcellular localization of its protein is associated with some cases of acute myeloid leukemia and colorectal cancer. [provided by RefSeq, Jul 2008]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
HOXB6-201
ENST00000225648
1676
224aa
ENSP00000225648
HOXB6-203
ENST00000484302
1960
224aa
ENSP00000420009
HOXB6-202
ENST00000470193
371
No protein
-
HOXB6-204
ENST00000490419
468
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
37257 Platelet Function Tests 3.0124000E-005 - 39596 Platelet Function Tests 2.0536700E-005 - 83622 Body Mass Index 2E-6 26604143
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000785 part_of chromatin 1 ISA Homo_sapiens(9606) Component GO:0000978 enables RNA polymerase II cis-regulatory region sequence-specific DNA binding 1 IBA Homo_sapiens(9606) Function GO:0000981 enables DNA-binding transcription factor activity, RNA polymerase II-specific 2 IBA,ISA Homo_sapiens(9606) Function GO:0003723 enables RNA binding 1 HDA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005634 is_active_in nucleus 1 IBA Homo_sapiens(9606) Component GO:0006357 involved_in regulation of transcription by RNA polymerase II 1 IBA Homo_sapiens(9606) Process GO:0009952 involved_in anterior/posterior pattern specification 1 IBA Homo_sapiens(9606) Process GO:0034101 involved_in erythrocyte homeostasis 1 IEA Homo_sapiens(9606) Process GO:0048704 involved_in embryonic skeletal system morphogenesis 1 IEA Homo_sapiens(9606) Process GO:1990837 enables sequence-specific double-stranded DNA binding 1 IDA Homo_sapiens(9606) Function
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