RBP Type
Canonical_RBPs
Diseases
CancerSARS-COV-2
Drug
N.A.
Main interacting RNAs
rRNA
Moonlighting functions
N.A.
Localizations
Stress granucle P-body Nucleoli
BulkPerturb-seq
N.A.
Ensembl ID ENSG00000107625 Gene ID
79009
Accession
17906
Symbol
DDX50
Alias
GU2;GUB;mcdrh;RH-II/GuB
Full Name
DExD-box helicase 50
Status
Confidence
Length
45562 bases
Strand
Plus strand
Position
10 : 68901286 - 68946847
RNA binding domain
ResIII , DEAD , GUCT
Summary
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box enzyme that may be involved in ribosomal RNA synthesis or processing. This gene and DDX21, also called RH-II/GuA, have similar genomic structures and are in tandem orientation on chromosome 10, suggesting that the two genes arose by gene duplication in evolution. This gene has pseudogenes on chromosomes 2, 3 and 4. Alternative splicing of this gene generates multiple transcript variants, but the full length nature of all the other variants but one has not been defined. [provided by RefSeq, Jul 2008]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000362687
DEAD
PF00270
7.5e-47
1
ENSP00000362687
ResIII
PF04851
1.6e-09
2
ENSP00000362687
GUCT
PF08152
7.4e-27
3
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
35215908
DDX50 Is a Viral Restriction Factor That Enhances IRF3 Activation.
A Mitchell Pallett
2022-02-03
Viruses
33692367
easyCLIP analysis of RNA-protein interactions incorporating absolute quantification.
F Douglas Porter
2021-03-10
Nature communications
Name
Transcript ID
bp
Protein
Translation ID
DDX50-205
ENST00000483593
1067
39aa
ENSP00000474785
DDX50-201
ENST00000373585
2501
737aa
ENSP00000362687
DDX50-204
ENST00000471475
888
51aa
ENSP00000474314
DDX50-202
ENST00000460470
531
No protein
-
DDX50-203
ENST00000466265
744
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
77646 Depressive Disorder 9E-6 20800221
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000107625 homo_sapiens ENSP00000379475 50.2336 25.7009 homo_sapiens ENSP00000362687 29.1723 14.9254 ENSG00000107625 homo_sapiens ENSP00000385536 33.4705 19.0672 homo_sapiens ENSP00000362687 33.1072 18.8602 ENSG00000107625 homo_sapiens ENSP00000263239 38.9552 22.0896 homo_sapiens ENSP00000362687 35.4138 20.0814 ENSG00000107625 homo_sapiens ENSP00000497641 49.635 29.927 homo_sapiens ENSP00000362687 27.6798 16.6893 ENSG00000107625 homo_sapiens ENSP00000482680 33.0719 19.6078 homo_sapiens ENSP00000362687 34.3284 20.3528 ENSG00000107625 homo_sapiens ENSP00000293831 50.4926 31.2808 homo_sapiens ENSP00000362687 27.8155 17.232 ENSG00000107625 homo_sapiens ENSP00000306117 44.3515 24.477 homo_sapiens ENSP00000362687 28.7653 15.8752 ENSG00000107625 homo_sapiens ENSP00000288071 44.2589 24.4259 homo_sapiens ENSP00000362687 28.7653 15.8752 ENSG00000107625 homo_sapiens ENSP00000481495 28.8708 16.6473 homo_sapiens ENSP00000362687 33.6499 19.403 ENSG00000107625 homo_sapiens ENSP00000416534 25.3876 14.5349 homo_sapiens ENSP00000362687 35.5495 20.3528 ENSG00000107625 homo_sapiens ENSP00000361232 31.5013 17.6944 homo_sapiens ENSP00000362687 31.886 17.9104 ENSG00000107625 homo_sapiens ENSP00000492643 16.7669 8.87218 homo_sapiens ENSP00000362687 30.2578 16.0109 ENSG00000107625 homo_sapiens ENSP00000238146 35.6667 20.6667 homo_sapiens ENSP00000362687 29.0366 16.825 ENSG00000107625 homo_sapiens ENSP00000225792 39.7394 23.2899 homo_sapiens ENSP00000362687 33.1072 19.403 ENSG00000107625 homo_sapiens ENSP00000368667 35.8162 20.1268 homo_sapiens ENSP00000362687 30.6649 17.232 ENSG00000107625 homo_sapiens ENSP00000330460 38.2876 19.8708 homo_sapiens ENSP00000362687 32.1574 16.6893 ENSG00000107625 homo_sapiens ENSP00000263576 41.4079 23.1884 homo_sapiens ENSP00000362687 27.137 15.1967 ENSG00000107625 homo_sapiens ENSP00000380495 34.0841 17.8679 homo_sapiens ENSP00000362687 30.8005 16.1465 ENSG00000107625 homo_sapiens ENSP00000314348 27.7714 15.4286 homo_sapiens ENSP00000362687 32.9715 18.3175 ENSG00000107625 homo_sapiens ENSP00000346120 68.1992 56.1941 homo_sapiens ENSP00000362687 72.4559 59.7015 ENSG00000107625 homo_sapiens ENSP00000374574 27.5053 16.6311 homo_sapiens ENSP00000362687 35.0068 21.1669 ENSG00000107625 homo_sapiens ENSP00000358716 27.5485 15.2913 homo_sapiens ENSP00000362687 30.8005 17.0963 ENSG00000107625 homo_sapiens ENSP00000442266 41.4079 23.8095 homo_sapiens ENSP00000362687 27.137 15.6038 ENSG00000107625 homo_sapiens ENSP00000479504 36.5609 20.3673 homo_sapiens ENSP00000362687 29.7151 16.5536 ENSG00000107625 homo_sapiens ENSP00000359361 37.1914 22.9938 homo_sapiens ENSP00000362687 32.7001 20.2171 ENSG00000107625 homo_sapiens ENSP00000326381 50.6143 32.1867 homo_sapiens ENSP00000362687 27.9512 17.7748 ENSG00000107625 homo_sapiens ENSP00000258772 37.8428 21.5722 homo_sapiens ENSP00000362687 28.0868 16.0109 ENSG00000107625 homo_sapiens ENSP00000494040 38.3686 22.8097 homo_sapiens ENSP00000362687 34.464 20.4885 ENSG00000107625 homo_sapiens ENSP00000336725 38.0303 22.8788 homo_sapiens ENSP00000362687 34.057 20.4885 ENSG00000107625 homo_sapiens ENSP00000247003 42.236 24.4306 homo_sapiens ENSP00000362687 27.6798 16.0109 ENSG00000107625 homo_sapiens ENSP00000330349 39.8714 23.6334 homo_sapiens ENSP00000362687 33.6499 19.9457 ENSG00000107625 homo_sapiens ENSP00000242776 50.5855 25.7611 homo_sapiens ENSP00000362687 29.308 14.9254 ENSG00000107625 homo_sapiens ENSP00000233084 30.9459 18.2432 homo_sapiens ENSP00000362687 31.0719 18.3175 ENSG00000107625 homo_sapiens ENSP00000304072 29.8524 16.5721 homo_sapiens ENSP00000362687 35.6852 19.81 ENSG00000107625 homo_sapiens ENSP00000350698 46.8132 28.1319 homo_sapiens ENSP00000362687 28.9009 17.3677 ENSG00000107625 homo_sapiens ENSP00000310723 28.6585 17.1951 homo_sapiens ENSP00000362687 31.886 19.1316 ENSG00000107625 homo_sapiens ENSP00000332340 37.963 20.7407 homo_sapiens ENSP00000362687 27.8155 15.1967 ENSG00000107625 homo_sapiens ENSP00000424838 32.8729 19.8895 homo_sapiens ENSP00000362687 32.2931 19.5387
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000107625 homo_sapiens ENSP00000362687 100 99.8643 nomascus_leucogenys ENSNLEP00000014191 100 99.8643 ENSG00000107625 homo_sapiens ENSP00000362687 100 99.8643 pan_paniscus ENSPPAP00000035895 100 99.8643 ENSG00000107625 homo_sapiens ENSP00000362687 100 100 pongo_abelii ENSPPYP00000002775 100 100 ENSG00000107625 homo_sapiens ENSP00000362687 100 99.8643 pan_troglodytes ENSPTRP00000059960 100 99.8643 ENSG00000107625 homo_sapiens ENSP00000362687 100 100 gorilla_gorilla ENSGGOP00000018967 100 100 ENSG00000107625 homo_sapiens ENSP00000362687 87.3813 79.5115 sarcophilus_harrisii ENSSHAP00000006538 86.7924 78.9757 ENSG00000107625 homo_sapiens ENSP00000362687 87.924 86.2958 choloepus_hoffmanni ENSCHOP00000000202 98.0333 96.2178 ENSG00000107625 homo_sapiens ENSP00000362687 83.8535 79.9186 dasypus_novemcinctus ENSDNOP00000001299 95.6656 91.1765 ENSG00000107625 homo_sapiens ENSP00000362687 86.9742 85.2103 erinaceus_europaeus ENSEEUP00000005300 87.2109 85.4422 ENSG00000107625 homo_sapiens ENSP00000362687 88.4668 86.4315 echinops_telfairi ENSETEP00000011421 88.8283 86.7847 ENSG00000107625 homo_sapiens ENSP00000362687 100 99.7286 callithrix_jacchus ENSCJAP00000035086 100 99.7286 ENSG00000107625 homo_sapiens ENSP00000362687 97.422 96.4722 cercocebus_atys ENSCATP00000017159 98.6264 97.6648 ENSG00000107625 homo_sapiens ENSP00000362687 91.1805 91.0448 macaca_fascicularis ENSMFAP00000025094 100 99.8512 ENSG00000107625 homo_sapiens ENSP00000362687 100 99.7286 macaca_mulatta ENSMMUP00000001350 100 99.7286 ENSG00000107625 homo_sapiens ENSP00000362687 93.6228 93.3514 macaca_nemestrina ENSMNEP00000015168 97.5955 97.3126 ENSG00000107625 homo_sapiens ENSP00000362687 97.9647 97.5577 mandrillus_leucophaeus ENSMLEP00000026372 99.0398 98.6283 ENSG00000107625 homo_sapiens ENSP00000362687 92.1303 91.1805 tursiops_truncatus ENSTTRP00000011778 92.2554 91.3043 ENSG00000107625 homo_sapiens ENSP00000362687 77.0692 75.3053 vulpes_vulpes ENSVVUP00000027935 94.3522 92.1927 ENSG00000107625 homo_sapiens ENSP00000362687 97.6934 95.6581 mus_spretus MGP_SPRETEiJ_P0024279 98.0926 96.049 ENSG00000107625 homo_sapiens ENSP00000362687 89.9593 89.4166 equus_asinus ENSEASP00005022873 98.6607 98.0655 ENSG00000107625 homo_sapiens ENSP00000362687 98.7788 97.1506 capra_hircus ENSCHIP00000000400 98.645 97.019 ENSG00000107625 homo_sapiens ENSP00000362687 98.9145 97.9647 loxodonta_africana ENSLAFP00000005192 99.3188 98.3651 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 98.3718 panthera_leo ENSPLOP00000023972 99.0528 98.1055 ENSG00000107625 homo_sapiens ENSP00000362687 98.7788 97.5577 ailuropoda_melanoleuca ENSAMEP00000019012 98.5115 97.2936 ENSG00000107625 homo_sapiens ENSP00000362687 90.502 89.1452 bos_indicus_hybrid ENSBIXP00005014857 99.256 97.7679 ENSG00000107625 homo_sapiens ENSP00000362687 97.6934 95.7938 oryctolagus_cuniculus ENSOCUP00000018368 97.9592 96.0544 ENSG00000107625 homo_sapiens ENSP00000362687 91.5875 90.9091 equus_caballus ENSECAP00000020644 98.1105 97.3837 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 97.9647 canis_lupus_familiaris ENSCAFP00845004191 99.0528 97.6996 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 98.3718 panthera_pardus ENSPPRP00000025508 99.187 98.2385 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 97.6934 marmota_marmota_marmota ENSMMMP00000010408 99.0528 97.429 ENSG00000107625 homo_sapiens ENSP00000362687 18.1818 17.3677 balaenoptera_musculus ENSBMSP00010019256 95.0355 90.7801 ENSG00000107625 homo_sapiens ENSP00000362687 97.9647 96.6079 cavia_porcellus ENSCPOP00000001929 98.2313 96.8708 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 98.3718 felis_catus ENSFCAP00000023971 99.0528 98.1055 ENSG00000107625 homo_sapiens ENSP00000362687 98.9145 97.829 ursus_americanus ENSUAMP00000014620 98.7805 97.6965 ENSG00000107625 homo_sapiens ENSP00000362687 87.6526 80.7327 monodelphis_domestica ENSMODP00000013458 86.7114 79.8658 ENSG00000107625 homo_sapiens ENSP00000362687 99.1859 97.422 bison_bison_bison ENSBBBP00000027218 99.1859 97.422 ENSG00000107625 homo_sapiens ENSP00000362687 98.7788 97.6934 monodon_monoceros ENSMMNP00015024426 98.3784 97.2973 ENSG00000107625 homo_sapiens ENSP00000362687 96.6079 94.7083 sus_scrofa ENSSSCP00000010924 98.4786 96.5422 ENSG00000107625 homo_sapiens ENSP00000362687 91.9946 90.7734 microcebus_murinus ENSMICP00000015973 99.2679 97.9502 ENSG00000107625 homo_sapiens ENSP00000362687 98.5075 96.4722 octodon_degus ENSODEP00000019768 98.6413 96.6033 ENSG00000107625 homo_sapiens ENSP00000362687 97.5577 94.9796 jaculus_jaculus ENSJJAP00000024483 97.6902 95.1087 ENSG00000107625 homo_sapiens ENSP00000362687 76.2551 73.9484 jaculus_jaculus ENSJJAP00000018342 91.3821 88.6179 ENSG00000107625 homo_sapiens ENSP00000362687 98.6432 97.1506 ovis_aries_rambouillet ENSOARP00020012290 98.6432 97.1506 ENSG00000107625 homo_sapiens ENSP00000362687 98.9145 97.829 ursus_maritimus ENSUMAP00000010278 98.6468 97.5643 ENSG00000107625 homo_sapiens ENSP00000362687 97.2863 94.3012 ochotona_princeps ENSOPRP00000001493 97.8172 94.8158 ENSG00000107625 homo_sapiens ENSP00000362687 90.7734 89.6879 delphinapterus_leucas ENSDLEP00000012007 98.3824 97.2059 ENSG00000107625 homo_sapiens ENSP00000362687 98.7788 97.2863 physeter_catodon ENSPCTP00005008941 98.645 97.1545 ENSG00000107625 homo_sapiens ENSP00000362687 97.5577 95.251 mus_caroli MGP_CAROLIEiJ_P0023134 97.9564 95.6403 ENSG00000107625 homo_sapiens ENSP00000362687 97.6934 95.6581 mus_musculus ENSMUSP00000020270 98.0926 96.049 ENSG00000107625 homo_sapiens ENSP00000362687 99.0502 97.2863 dipodomys_ordii ENSDORP00000006854 99.0502 97.2863 ENSG00000107625 homo_sapiens ENSP00000362687 86.7029 85.346 mustela_putorius_furo ENSMPUP00000004554 98.6111 97.0679 ENSG00000107625 homo_sapiens ENSP00000362687 84.9389 82.0896 aotus_nancymaae ENSANAP00000002277 90.7246 87.6812 ENSG00000107625 homo_sapiens ENSP00000362687 90.502 90.2307 saimiri_boliviensis_boliviensis ENSSBOP00000002836 99.8503 99.5509 ENSG00000107625 homo_sapiens ENSP00000362687 98.5075 97.2863 vicugna_pacos ENSVPAP00000000579 98.5075 97.2863 ENSG00000107625 homo_sapiens ENSP00000362687 100 99.7286 chlorocebus_sabaeus ENSCSAP00000003936 100 99.7286 ENSG00000107625 homo_sapiens ENSP00000362687 77.6119 76.3908 tupaia_belangeri ENSTBEP00000000950 77.6119 76.3908 ENSG00000107625 homo_sapiens ENSP00000362687 44.2334 43.0122 mesocricetus_auratus ENSMAUP00000000109 96.7359 94.0653 ENSG00000107625 homo_sapiens ENSP00000362687 44.2334 43.0122 mesocricetus_auratus ENSMAUP00000011259 96.7359 94.0653 ENSG00000107625 homo_sapiens ENSP00000362687 98.7788 97.829 phocoena_sinus ENSPSNP00000025860 98.2456 97.3009 ENSG00000107625 homo_sapiens ENSP00000362687 98.6432 97.5577 camelus_dromedarius ENSCDRP00005025729 98.5095 97.4255 ENSG00000107625 homo_sapiens ENSP00000362687 99.5929 98.3718 carlito_syrichta ENSTSYP00000003845 99.5929 98.3718 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 98.3718 panthera_tigris_altaica ENSPTIP00000006597 99.187 98.2385 ENSG00000107625 homo_sapiens ENSP00000362687 97.6934 95.251 rattus_norvegicus ENSRNOP00000097507 98.0926 95.6403 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 98.3718 prolemur_simus ENSPSMP00000013315 99.3216 98.3718 ENSG00000107625 homo_sapiens ENSP00000362687 98.1004 95.9294 microtus_ochrogaster ENSMOCP00000002131 97.9675 95.7995 ENSG00000107625 homo_sapiens ENSP00000362687 83.5821 81.9539 sorex_araneus ENSSARP00000012243 83.9237 82.2888 ENSG00000107625 homo_sapiens ENSP00000362687 95.5224 92.2659 peromyscus_maniculatus_bairdii ENSPEMP00000033145 95.0067 91.7679 ENSG00000107625 homo_sapiens ENSP00000362687 99.1859 97.422 bos_mutus ENSBMUP00000030251 99.1859 97.422 ENSG00000107625 homo_sapiens ENSP00000362687 97.5577 95.5224 mus_spicilegus ENSMSIP00000036560 97.9564 95.9128 ENSG00000107625 homo_sapiens ENSP00000362687 98.3718 96.0651 cricetulus_griseus_chok1gshd ENSCGRP00001021348 98.5054 96.1957 ENSG00000107625 homo_sapiens ENSP00000362687 77.4763 76.2551 pteropus_vampyrus ENSPVAP00000008968 77.5815 76.3587 ENSG00000107625 homo_sapiens ENSP00000362687 98.2361 96.3365 myotis_lucifugus ENSMLUP00000016041 98.7722 96.8622 ENSG00000107625 homo_sapiens ENSP00000362687 87.2456 78.9688 vombatus_ursinus ENSVURP00010019870 82.9677 75.0968 ENSG00000107625 homo_sapiens ENSP00000362687 99.0502 97.829 neovison_vison ENSNVIP00000015924 98.7821 97.5643 ENSG00000107625 homo_sapiens ENSP00000362687 99.1859 97.422 bos_taurus ENSBTAP00000022002 99.1859 97.422 ENSG00000107625 homo_sapiens ENSP00000362687 97.6934 95.9294 heterocephalus_glaber_female ENSHGLP00000018797 97.6934 95.9294 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 97.9647 canis_lupus_dingo ENSCAFP00020033457 99.0528 97.6996 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 97.9647 sciurus_vulgaris ENSSVLP00005005029 99.187 97.832 ENSG00000107625 homo_sapiens ENSP00000362687 87.517 79.3758 phascolarctos_cinereus ENSPCIP00000021116 86.4611 78.4182 ENSG00000107625 homo_sapiens ENSP00000362687 70.692 70.1493 procavia_capensis ENSPCAP00000009048 84.9918 84.3393 ENSG00000107625 homo_sapiens ENSP00000362687 98.5075 96.8792 nannospalax_galili ENSNGAP00000003635 98.7755 97.1429 ENSG00000107625 homo_sapiens ENSP00000362687 99.1859 97.422 bos_grunniens ENSBGRP00000016663 99.1859 97.422 ENSG00000107625 homo_sapiens ENSP00000362687 98.7788 97.829 chinchilla_lanigera ENSCLAP00000018920 98.913 97.962 ENSG00000107625 homo_sapiens ENSP00000362687 73.8128 69.6065 chinchilla_lanigera ENSCLAP00000002686 90.5158 85.3577 ENSG00000107625 homo_sapiens ENSP00000362687 45.5902 44.5047 chinchilla_lanigera ENSCLAP00000002140 90.566 88.4097 ENSG00000107625 homo_sapiens ENSP00000362687 91.1805 89.0095 catagonus_wagneri ENSCWAP00000028800 97.6744 95.3488 ENSG00000107625 homo_sapiens ENSP00000362687 97.829 96.0651 ictidomys_tridecemlineatus ENSSTOP00000021892 98.3629 96.5894 ENSG00000107625 homo_sapiens ENSP00000362687 99.4573 98.3718 otolemur_garnettii ENSOGAP00000001642 99.4573 98.3718 ENSG00000107625 homo_sapiens ENSP00000362687 81.8182 78.5617 cebus_imitator ENSCCAP00000025554 91.0876 87.4622 ENSG00000107625 homo_sapiens ENSP00000362687 99.3216 97.829 urocitellus_parryii ENSUPAP00010010658 99.187 97.6965 ENSG00000107625 homo_sapiens ENSP00000362687 98.7788 97.829 moschus_moschiferus ENSMMSP00000031175 98.645 97.6965 ENSG00000107625 homo_sapiens ENSP00000362687 99.8643 99.4573 rhinopithecus_roxellana ENSRROP00000016010 99.8643 99.4573 ENSG00000107625 homo_sapiens ENSP00000362687 97.829 95.7938 mus_pahari MGP_PahariEiJ_P0086305 98.2289 96.1853 ENSG00000107625 homo_sapiens ENSP00000362687 72.4559 69.7422 propithecus_coquereli ENSPCOP00000004300 89.7479 86.3866 ENSG00000107625 homo_sapiens ENSP00000362687 72.0488 57.9376 oryzias_javanicus ENSOJAP00000044388 68.3398 54.955
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0003723 enables RNA binding 2 HDA,IBA Homo_sapiens(9606) Function GO:0003724 enables RNA helicase activity 1 IBA Homo_sapiens(9606) Function GO:0005524 enables ATP binding 1 IEA Homo_sapiens(9606) Function GO:0005730 is_active_in nucleolus 2 IBA,IDA Homo_sapiens(9606) Component GO:0005886 located_in plasma membrane 1 IDA Homo_sapiens(9606) Component GO:0016020 located_in membrane 1 HDA Homo_sapiens(9606) Component GO:0016887 enables ATP hydrolysis activity 1 IEA Homo_sapiens(9606) Function
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