RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	N.A.
Moonlighting functions	E3 ligase
Localizations	N.A.
BulkPerturb-seq

Description

Ensembl ID	ENSG00000104228	Gene ID	23087	Accession	16285
Symbol	TRIM35	Alias	HLS5;MAIR	Full Name	tripartite motif containing 35
Status	Confidence	Length	26387 bases	Strand	Minus strand
Position	8 : 27284886 - 27311272	RNA binding domain	SPRY
Summary	The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The function of this protein has not been identified. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000301924	SPRY	PF00622	6.8e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TRIM35-201	ENST00000305364	4183	493aa	ENSP00000301924
TRIM35-204	ENST00000521283	619	100aa	ENSP00000429356
TRIM35-203	ENST00000521253	1215	266aa	ENSP00000428770
TRIM35-202	ENST00000519219	423	No protein	-

Gene Model

Click here to download ENSG00000104228's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000104228's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003674	enables molecular_function	1	ND	Homo_sapiens(9606)	Function
GO:0005634	located_in nucleus	1	ISS	Homo_sapiens(9606)	Component
GO:0005737	is_active_in cytoplasm	2	IBA,ISS	Homo_sapiens(9606)	Component
GO:0006915	involved_in apoptotic process	1	IEA	Homo_sapiens(9606)	Process
GO:0008270	enables zinc ion binding	1	IEA	Homo_sapiens(9606)	Function
GO:0016567	involved_in protein ubiquitination	2	IBA,IEA	Homo_sapiens(9606)	Process
GO:0043065	involved_in positive regulation of apoptotic process	2	IBA,IDA	Homo_sapiens(9606)	Process
GO:0044790	involved_in suppression of viral release by host	1	IDA	Homo_sapiens(9606)	Process
GO:0045087	involved_in innate immune response	2	IBA,IDA	Homo_sapiens(9606)	Process
GO:0045930	involved_in negative regulation of mitotic cell cycle	1	IDA	Homo_sapiens(9606)	Process
GO:0061630	enables ubiquitin protein ligase activity	1	IBA	Homo_sapiens(9606)	Function

Expression