RBP Type
Non-canonical_RBPs
Diseases
SARS-COV-2
Drug
Drug
Main interacting RNAs
N.A.
Moonlighting functions
Metabolic enzyme
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000100804 Gene ID
5693
Accession
9542
Symbol
PSMB5
Alias
MB1;LMPX
Full Name
proteasome 20S subunit beta 5
Status
Confidence
Length
18688 bases
Strand
Minus strand
Position
14 : 23016543 - 23035230
RNA binding domain
N.A.
Summary
The proteasome is a multicatalytic proteinase complex with a highly ordered ring-shaped 20S core structure. The core structure is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes a member of the proteasome B-type family, also known as the T1B family, that is a 20S core beta subunit in the proteasome. This catalytic subunit is not present in the immunoproteasome and is replaced by catalytic subunit 3i (proteasome beta 8 subunit). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2009]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
35617426
Identification of PSMB5 as a genetic modifier of fragile X-associated tremor/ataxia syndrome.
Eun Ha Kong
2022-05-31
Proceedings of the National Academy of Sciences of the United States of America
Name
Transcript ID
bp
Protein
Translation ID
PSMB5-206
ENST00000555895
444
118aa
ENSP00000451816
PSMB5-202
ENST00000361611
1044
263aa
ENSP00000355325
PSMB5-205
ENST00000493471
1117
203aa
ENSP00000452424
PSMB5-204
ENST00000460922
729
84aa
ENSP00000451286
PSMB5-203
ENST00000425762
900
160aa
ENSP00000395206
PSMB5-201
ENST00000334454
796
77aa
ENSP00000334973
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000502 part_of proteasome complex 2 IDA,NAS Homo_sapiens(9606) Component GO:0004175 enables endopeptidase activity 1 IBA Homo_sapiens(9606) Function GO:0004298 enables threonine-type endopeptidase activity 1 IEA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005634 located_in nucleus 3 HDA,IBA,IDA Homo_sapiens(9606) Component GO:0005654 located_in nucleoplasm 2 IDA,TAS Homo_sapiens(9606) Component GO:0005737 is_active_in cytoplasm 1 IDA Homo_sapiens(9606) Component GO:0005813 located_in centrosome 1 IDA Homo_sapiens(9606) Component GO:0005829 located_in cytosol 1 TAS Homo_sapiens(9606) Component GO:0005839 part_of proteasome core complex 2 IDA,ISS Homo_sapiens(9606) Component GO:0006508 acts_upstream_of_or_within proteolysis 1 IDA Homo_sapiens(9606) Process GO:0006979 involved_in response to oxidative stress 1 IEA Homo_sapiens(9606) Process GO:0008233 enables peptidase activity 1 IDA Homo_sapiens(9606) Function GO:0010498 involved_in proteasomal protein catabolic process 1 IBA Homo_sapiens(9606) Process GO:0019774 part_of proteasome core complex, beta-subunit complex 2 IBA,ISS Homo_sapiens(9606) Component GO:0043161 involved_in proteasome-mediated ubiquitin-dependent protein catabolic process 1 NAS Homo_sapiens(9606) Process GO:0070062 located_in extracellular exosome 1 HDA Homo_sapiens(9606) Component
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