RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	snRNA
Moonlighting functions	N.A.
Localizations	N.A.
BulkPerturb-seq	N.A.

Description

Ensembl ID	ENSG00000100319	Gene ID	55954	Accession	28046
Symbol	ZMAT5	Alias		Full Name
Status	Confidence	Length	36052 bases	Strand	Minus strand
Position	22 : 29730956 - 29767007	RNA binding domain	zf-CCCH , zf-U1
Summary

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000344241	zf-U1	PF06220	1.2e-06	1
ENSP00000344241	zf-CCCH	PF00642	2e-07	2

Showing 1 to 2 of 2 entries

RNA binding proteomes (RBPomes)

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Pubmed ID	Full Name	Cell	Author	Time	Doi
22658674	RIC_PMID22658674_Hela_human	Hela	Alfredo Castello	2012 Jun 8	doi: 10.1016/j.cell.2012.04.031.?Epub 2012 May 31
25173706	Pclap_PMID25173706_Hs_HEK293	HEK293	Katharina Kramer	2014 Oct;11	doi: 10.1038/nmeth.3092.?Epub 2014 Aug 31
30528433	XRNAX_PMID30528433_Hs_HEK293	HEK293	Jakob Trendel	2019 Jan 10	doi: 10.1016/j.cell.2018.11.004.?Epub 2018 Dec 6
30528433	XRNAX_PMID30528433_Hs_HeLa	HeLa	Jakob Trendel	2019 Jan 10	doi: 10.1016/j.cell.2018.11.004.?Epub 2018 Dec 6
30824702	PtexRIC_PMID30824702_293T_human	293T	Erika C Urdaneta	2019 Mar 1	doi: 10.1038/s41467-019-08942-3
33235359	RIC_PMID33235359_humanRIC.superset.2021		Fatima Gebauer	2021 Mar	doi: 10.1038/s41576-020-00302-y
37421941	RIC_PMID37421941_Hydra10_human		Wenhao Jin	2023 Jul 20	doi: 10.1016/j.molcel.2023.06.019.?Epub 2023 Jul 7

Showing 1 to 7 of 7 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
ZMAT5-201	ENST00000344318	945	170aa	ENSP00000344241
ZMAT5-202	ENST00000489010	2468	No protein	-

Showing 1 to 2 of 2 entries

Gene Model

Click here to download ENSG00000100319's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSG00000100319's PPI file

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000100319	homo_sapiens	ENSP00000344241	100	98.8235	nomascus_leucogenys	ENSNLEP00000004127	100	98.8235
ENSG00000100319	homo_sapiens	ENSP00000344241	100	100	pan_paniscus	ENSPPAP00000011885	100	100
ENSG00000100319	homo_sapiens	ENSP00000344241	100	100	pongo_abelii	ENSPPYP00000013048	100	100
ENSG00000100319	homo_sapiens	ENSP00000344241	100	100	pan_troglodytes	ENSPTRP00000024512	100	100
ENSG00000100319	homo_sapiens	ENSP00000344241	100	100	gorilla_gorilla	ENSGGOP00000003726	100	100
ENSG00000100319	homo_sapiens	ENSP00000344241	83.5294	72.9412	ornithorhynchus_anatinus	ENSOANP00000035312	82.0809	71.6763
ENSG00000100319	homo_sapiens	ENSP00000344241	57.6471	51.7647	notamacropus_eugenii	ENSMEUP00000002268	58.3333	52.381
ENSG00000100319	homo_sapiens	ENSP00000344241	91.7647	88.8235	dasypus_novemcinctus	ENSDNOP00000000686	91.7647	88.8235
ENSG00000100319	homo_sapiens	ENSP00000344241	90	84.7059	erinaceus_europaeus	ENSEEUP00000000838	92.7273	87.2727
ENSG00000100319	homo_sapiens	ENSP00000344241	90.5882	86.4706	echinops_telfairi	ENSETEP00000003109	90.5882	86.4706

Showing 1 to 10 of 194 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005654	located_in nucleoplasm	2	IDA,TAS	Homo_sapiens(9606)	Component
GO:0005689	part_of U12-type spliceosomal complex	2	IBA,IDA	Homo_sapiens(9606)	Component
GO:0005515	enables protein binding	1	IPI	Homo_sapiens(9606)	Function
GO:0006397	involved_in mRNA processing	1	IEA	Homo_sapiens(9606)	Process
GO:0008270	enables zinc ion binding	1	IEA	Homo_sapiens(9606)	Function
GO:0008380	involved_in RNA splicing	1	IC	Homo_sapiens(9606)	Process

Showing 1 to 6 of 6 entries

Expression

Contents

Description
RBDs
RBPomes
Transcripts
Gene Model
PPI
Orthologs
Gene Ontology
Expression