Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases CancerFlavivirusesHIVSARS-COV-2SINV
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions N.A.
Localizations Stress granucle
BulkPerturb-seq N.A.

Description

Ensembl ID ENSG00000099901 Gene ID 5902 Accession 9847
Symbol RANBP1 Alias HTF9A Full Name RAN binding protein 1
Status Confidence Length 11418 bases Strand Plus strand
Position 22 : 20115938 - 20127355 RNA binding domain N.A.
Summary This gene encodes a protein that forms a complex with Ras-related nuclear protein (Ran) and metabolizes guanoside triphosphate (GTP). This complex participates in the regulation of the cell cycle by controlling transport of proteins and nucleic acids into the nucleus. There are multiple pseudogenes for this gene on chromosomes 9, 12, 17, and X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RANBP1-209 ENST00000435265 1879 73aa ENSP00000390139
RANBP1-208 ENST00000430524 1221 278aa ENSP00000401564
RANBP1-202 ENST00000402752 1132 200aa ENSP00000384925
RANBP1-201 ENST00000331821 1054 201aa ENSP00000327583
RANBP1-213 ENST00000488484 699 No protein -
RANBP1-210 ENST00000448394 1151 116aa ENSP00000516768
RANBP1-203 ENST00000411892 584 No protein -
RANBP1-211 ENST00000467920 529 No protein -
RANBP1-204 ENST00000416427 645 53aa ENSP00000404126
RANBP1-206 ENST00000421656 333 53aa ENSP00000400940
RANBP1-207 ENST00000423859 832 204aa ENSP00000404298
RANBP1-205 ENST00000418705 932 145aa ENSP00000413502
RANBP1-212 ENST00000486575 2177 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000099901homo_sapiensENSP0000034148313.05117.23104homo_sapiensENSP0000040156426.618714.7482
ENSG00000099901homo_sapiensENSP000002831955.428043.7531homo_sapiensENSP0000040156462.949643.5252
ENSG00000099901homo_sapiensENSP0000029660415.05388.17204homo_sapiensENSP0000040156425.179913.6691
ENSG00000099901homo_sapiensENSP000004929543.758541.93622homo_sapiensENSP0000040156423.74112.2302
ENSG00000099901homo_sapiensENSP000003308423.909352.09632homo_sapiensENSP0000040156424.820113.3094
ENSG00000099901homo_sapiensENSP000003066373.909352.09632homo_sapiensENSP0000040156424.820113.3094
ENSG00000099901homo_sapiensENSP000003812143.758541.93622homo_sapiensENSP0000040156423.74112.2302
ENSG00000099901homo_sapiensENSP000000169463.909352.09632homo_sapiensENSP0000040156424.820113.3094
ENSG00000099901homo_sapiensENSP000003865883.868031.93402homo_sapiensENSP0000040156424.460412.2302
ENSG00000099901homo_sapiensENSP000003868103.868031.9909homo_sapiensENSP0000040156424.460412.5899

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000099901homo_sapiensENSP00000401564100100nomascus_leucogenysENSNLEP00000006890100100
ENSG00000099901homo_sapiensENSP00000401564100100pan_paniscusENSPPAP00000040664100100
ENSG00000099901homo_sapiensENSP00000401564100100pongo_abeliiENSPPYP00000036129100100
ENSG00000099901homo_sapiensENSP00000401564100100pan_troglodytesENSPTRP00000080595100100
ENSG00000099901homo_sapiensENSP0000040156484.532484.1727gorilla_gorillaENSGGOP0000000077399.156198.7342
ENSG00000099901homo_sapiensENSP0000040156465.827360.4317ornithorhynchus_anatinusENSOANP0000002295793.846286.1538
ENSG00000099901homo_sapiensENSP0000040156453.597148.9209sarcophilus_harrisiiENSSHAP0000002822478.83671.9577
ENSG00000099901homo_sapiensENSP0000040156465.467661.8705notamacropus_eugeniiENSMEUP0000001518993.333388.2051
ENSG00000099901homo_sapiensENSP0000040156467.266264.7482dasypus_novemcinctusENSDNOP0000002024887.383284.1122
ENSG00000099901homo_sapiensENSP0000040156452.158350.7194erinaceus_europaeusENSEEUP0000001085072.139370.1493
ENSG00000099901homo_sapiensENSP0000040156467.625964.7482echinops_telfairiENSETEP0000001297394.472490.4523
ENSG00000099901homo_sapiensENSP0000040156497.48297.1223callithrix_jacchusENSCJAP0000001982397.833997.4729
ENSG00000099901homo_sapiensENSP00000401564100100cercocebus_atysENSCATP00000019362100100
ENSG00000099901homo_sapiensENSP00000401564100100macaca_fascicularisENSMFAP00000039466100100
ENSG00000099901homo_sapiensENSP00000401564100100macaca_mulattaENSMMUP00000059723100100
ENSG00000099901homo_sapiensENSP00000401564100100macaca_nemestrinaENSMNEP00000012094100100
ENSG00000099901homo_sapiensENSP00000401564100100papio_anubisENSPANP00000031166100100
ENSG00000099901homo_sapiensENSP00000401564100100mandrillus_leucophaeusENSMLEP00000029090100100
ENSG00000099901homo_sapiensENSP0000040156474.100771.9424vulpes_vulpesENSVVUP0000003532586.192583.682
ENSG00000099901homo_sapiensENSP0000040156469.424566.5468mus_spretusMGP_SPRETEiJ_P004261395.073991.133
ENSG00000099901homo_sapiensENSP0000040156496.762695.6835equus_asinusENSEASP0000505304397.111996.0289
ENSG00000099901homo_sapiensENSP0000040156467.985665.8273capra_hircusENSCHIP0000002669391.747688.835
ENSG00000099901homo_sapiensENSP0000040156468.70564.3885loxodonta_africanaENSLAFP0000000491494.088788.1773
ENSG00000099901homo_sapiensENSP0000040156497.841796.0432panthera_leoENSPLOP0000002747797.841796.0432
ENSG00000099901homo_sapiensENSP0000040156468.345367.6259ailuropoda_melanoleucaENSAMEP0000001239996.938895.9184
ENSG00000099901homo_sapiensENSP0000040156466.906564.7482bos_indicus_hybridENSBIXP0000501403290.291387.3786
ENSG00000099901homo_sapiensENSP0000040156471.582765.8273oryctolagus_cuniculusENSOCUP0000001620874.81268.797
ENSG00000099901homo_sapiensENSP0000040156497.122396.0432equus_caballusENSECAP0000002602997.472996.3899
ENSG00000099901homo_sapiensENSP0000040156470.503668.3453panthera_pardusENSPPRP0000002522897.029794.0594
ENSG00000099901homo_sapiensENSP0000040156466.546864.3885marmota_marmota_marmotaENSMMMP0000000499089.805886.8932
ENSG00000099901homo_sapiensENSP0000040156469.424567.9856balaenoptera_musculusENSBMSP0001002542596.594.5
ENSG00000099901homo_sapiensENSP0000040156467.625965.1079cavia_porcellusENSCPOP0000002896191.262187.8641
ENSG00000099901homo_sapiensENSP0000040156497.48296.0432felis_catusENSFCAP0000002697797.48296.0432
ENSG00000099901homo_sapiensENSP0000040156491.726690.2878ursus_americanusENSUAMP0000001345487.628986.2543
ENSG00000099901homo_sapiensENSP0000040156440.647537.7698bison_bison_bisonENSBBBP0000002599566.081961.4035
ENSG00000099901homo_sapiensENSP0000040156469.424567.9856monodon_monocerosENSMMNP0001500281193.689391.7476
ENSG00000099901homo_sapiensENSP0000040156468.345367.2662sus_scrofaENSSSCP0000001081092.23390.7767
ENSG00000099901homo_sapiensENSP0000040156497.48296.7626microcebus_murinusENSMICP0000002435797.48296.7626
ENSG00000099901homo_sapiensENSP0000040156448.561146.0432octodon_degusENSODEP000000159349085.3333
ENSG00000099901homo_sapiensENSP0000040156441.366938.8489octodon_degusENSODEP0000000560183.333378.2609
ENSG00000099901homo_sapiensENSP0000040156467.266264.7482octodon_degusENSODEP0000002165690.776787.3786
ENSG00000099901homo_sapiensENSP0000040156461.510855.7554octodon_degusENSODEP0000001550167.857161.5079
ENSG00000099901homo_sapiensENSP0000040156465.107961.8705jaculus_jaculusENSJJAP0000000771893.29988.6598
ENSG00000099901homo_sapiensENSP0000040156468.70565.4676jaculus_jaculusENSJJAP0000000692794.088789.6552
ENSG00000099901homo_sapiensENSP0000040156467.985665.8273ovis_aries_rambouilletENSOARP0002000949291.747688.835
ENSG00000099901homo_sapiensENSP0000040156485.611583.813ursus_maritimusENSUMAP0000000983984.098982.3322
ENSG00000099901homo_sapiensENSP0000040156467.625965.1079ochotona_princepsENSOPRP0000000777293.532390.0498
ENSG00000099901homo_sapiensENSP0000040156489.568389.2086delphinapterus_leucasENSDLEP0000002786491.208890.8425
ENSG00000099901homo_sapiensENSP0000040156469.424567.6259physeter_catodonENSPCTP0000501294496.594
ENSG00000099901homo_sapiensENSP0000040156448.561147.8417physeter_catodonENSPCTP0000502774790.60489.2617
ENSG00000099901homo_sapiensENSP0000040156469.424566.5468mus_caroliMGP_CAROLIEiJ_P004076195.073991.133
ENSG00000099901homo_sapiensENSP0000040156469.424566.5468mus_musculusENSMUSP0000011130995.073991.133
ENSG00000099901homo_sapiensENSP0000040156469.784266.187dipodomys_ordiiENSDORP0000001063695.566590.6404
ENSG00000099901homo_sapiensENSP0000040156465.467661.5108dipodomys_ordiiENSDORP0000002749091.919286.3636
ENSG00000099901homo_sapiensENSP0000040156468.345365.1079mustela_putorius_furoENSMPUP0000001861291.346287.0192
ENSG00000099901homo_sapiensENSP0000040156469.424567.2662mustela_putorius_furoENSMPUP0000000409392.344589.4737
ENSG00000099901homo_sapiensENSP0000040156471.942469.4245aotus_nancymaaeENSANAP0000004035785.106482.1277
ENSG00000099901homo_sapiensENSP0000040156497.122396.7626aotus_nancymaaeENSANAP0000001309497.122396.7626
ENSG00000099901homo_sapiensENSP0000040156469.424567.2662saimiri_boliviensis_boliviensisENSSBOP0000000518496.984993.9698
ENSG00000099901homo_sapiensENSP0000040156497.841797.482saimiri_boliviensis_boliviensisENSSBOP0000003831498.194997.8339
ENSG00000099901homo_sapiensENSP0000040156471.582770.5036chlorocebus_sabaeusENSCSAP0000000821799.00597.5124
ENSG00000099901homo_sapiensENSP0000040156467.985666.9065tupaia_belangeriENSTBEP0000000680297.422795.8763
ENSG00000099901homo_sapiensENSP0000040156469.424566.9065mesocricetus_auratusENSMAUP0000000066495.073991.6256
ENSG00000099901homo_sapiensENSP0000040156469.424567.9856phocoena_sinusENSPSNP0000003022393.689391.7476
ENSG00000099901homo_sapiensENSP0000040156467.266265.1079camelus_dromedariusENSCDRP0000502584891.219588.2927
ENSG00000099901homo_sapiensENSP0000040156496.762695.6835carlito_syrichtaENSTSYP0000003439897.111996.0289
ENSG00000099901homo_sapiensENSP0000040156469.784268.705panthera_tigris_altaicaENSPTIP0000001790993.719892.2705
ENSG00000099901homo_sapiensENSP0000040156467.266263.6691rattus_norvegicusENSRNOP0000009778592.118287.1921
ENSG00000099901homo_sapiensENSP0000040156469.424566.5468rattus_norvegicusENSRNOP0000008179788.127984.4749
ENSG00000099901homo_sapiensENSP0000040156496.762696.0432prolemur_simusENSPSMP0000000320997.111996.3899
ENSG00000099901homo_sapiensENSP0000040156469.424566.187microtus_ochrogasterENSMOCP0000000084095.073990.6404
ENSG00000099901homo_sapiensENSP0000040156469.424568.705sorex_araneusENSSARP0000000841998.469497.449
ENSG00000099901homo_sapiensENSP0000040156469.424565.8273peromyscus_maniculatus_bairdiiENSPEMP0000002169695.073990.1478
ENSG00000099901homo_sapiensENSP0000040156467.266265.1079bos_mutusENSBMUP0000000581583.111180.4444
ENSG00000099901homo_sapiensENSP0000040156462.589959.3525mus_spicilegusENSMSIP000000239587571.1207
ENSG00000099901homo_sapiensENSP0000040156469.424566.9065cricetulus_griseus_chok1gshdENSCGRP0000101970895.073991.6256
ENSG00000099901homo_sapiensENSP0000040156470.143968.3453pteropus_vampyrusENSPVAP0000001480497.014994.5274
ENSG00000099901homo_sapiensENSP0000040156469.424567.6259myotis_lucifugusENSMLUP0000001599192.788590.3846
ENSG00000099901homo_sapiensENSP0000040156466.906561.1511vombatus_ursinusENSVURP0001001899669.40363.4328
ENSG00000099901homo_sapiensENSP0000040156495.323793.8849rhinolophus_ferrumequinumENSRFEP0001003279494.982193.5484
ENSG00000099901homo_sapiensENSP0000040156469.424566.9065neovison_visonENSNVIP0000002947792.788589.4231
ENSG00000099901homo_sapiensENSP0000040156466.906564.7482bos_taurusENSBTAP0000000874490.291387.3786
ENSG00000099901homo_sapiensENSP0000040156467.266264.3885heterocephalus_glaber_femaleENSHGLP0000000905891.219587.3171
ENSG00000099901homo_sapiensENSP0000040156499.640399.6403rhinopithecus_bietiENSRBIP0000003292899.640399.6403
ENSG00000099901homo_sapiensENSP0000040156469.064867.2662canis_lupus_dingoENSCAFP0002000952992.307789.9038
ENSG00000099901homo_sapiensENSP0000040156493.165591.7266sciurus_vulgarisENSSVLP0000501107491.197289.7887
ENSG00000099901homo_sapiensENSP0000040156466.906562.9496phascolarctos_cinereusENSPCIP0000005420076.229571.7213
ENSG00000099901homo_sapiensENSP0000040156469.784265.1079procavia_capensisENSPCAP000000150879790.5
ENSG00000099901homo_sapiensENSP0000040156469.424566.9065nannospalax_galiliENSNGAP0000001175495.073991.6256
ENSG00000099901homo_sapiensENSP0000040156430.575529.1367bos_grunniensENSBGRP0000001632487.628983.5052
ENSG00000099901homo_sapiensENSP0000040156467.266265.1079chinchilla_lanigeraENSCLAP0000002141790.776787.8641
ENSG00000099901homo_sapiensENSP0000040156466.906565.8273cervus_hanglu_yarkandensisENSCHYP0000001673492.537391.0448
ENSG00000099901homo_sapiensENSP0000040156468.345367.2662catagonus_wagneriENSCWAP0000001260990.909189.4737
ENSG00000099901homo_sapiensENSP000004015645049.2806ictidomys_tridecemlineatusENSSTOP0000002307889.102687.8205
ENSG00000099901homo_sapiensENSP0000040156470.503668.705otolemur_garnettiiENSOGAP0000002116897.512495.0249
ENSG00000099901homo_sapiensENSP0000040156497.841797.8417cebus_imitatorENSCCAP0000003542797.841797.8417
ENSG00000099901homo_sapiensENSP0000040156467.625965.4676moschus_moschiferusENSMMSP0000000850491.262188.3495
ENSG00000099901homo_sapiensENSP0000040156499.280699.2806rhinopithecus_roxellanaENSRROP0000000910299.63999.639
ENSG00000099901homo_sapiensENSP0000040156464.388563.6691rhinopithecus_roxellanaENSRROP0000003249197.814296.7213
ENSG00000099901homo_sapiensENSP0000040156469.424566.5468mus_pahariMGP_PahariEiJ_P002814895.073991.133
ENSG00000099901homo_sapiensENSP0000040156497.122396.0432propithecus_coquereliENSPCOP0000003086797.122396.0432
ENSG00000099901homo_sapiensENSP0000040156423.381314.3885caenorhabditis_elegansF59A2.1b.17.352944.52489
ENSG00000099901homo_sapiensENSP0000040156425.539615.4676drosophila_melanogasterFBpp02932352.612211.58205
ENSG00000099901homo_sapiensENSP0000040156447.841738.4892ciona_intestinalisENSCINP0000002360163.033250.7109
ENSG00000099901homo_sapiensENSP000004015645.035972.8777callorhinchus_miliiENSCMIP000000047125.833333.33333
ENSG00000099901homo_sapiensENSP0000040156464.028856.4748latimeria_chalumnaeENSLACP0000001992382.407472.6852
ENSG00000099901homo_sapiensENSP0000040156462.230252.8777ictalurus_punctatusENSIPUP0000003464680.841168.6916
ENSG00000099901homo_sapiensENSP0000040156462.589954.6763esox_luciusENSELUP0000006534382.464572.0379
ENSG00000099901homo_sapiensENSP0000040156468.70562.5899chrysemys_picta_belliiENSCPBP0000002379381.974374.6781
ENSG00000099901homo_sapiensENSP0000040156466.906560.7914sphenodon_punctatusENSSPUP0000001936188.571480.4762
ENSG00000099901homo_sapiensENSP0000040156466.906562.2302crocodylus_porosusENSCPRP0000500027588.995282.7751
ENSG00000099901homo_sapiensENSP0000040156466.906562.9496anas_platyrhynchos_platyrhynchosENSAPLP0000000345588.995283.7321
ENSG00000099901homo_sapiensENSP0000040156474.460468.3453gallus_gallusENSGALP0001002975055.945951.3514
ENSG00000099901homo_sapiensENSP0000040156466.546861.8705meleagris_gallopavoENSMGAP0000000102283.333377.4775
ENSG00000099901homo_sapiensENSP0000040156465.107961.8705serinus_canariaENSSCAP0000000610188.292783.9024
ENSG00000099901homo_sapiensENSP0000040156460.431758.2734parus_majorENSPMJP0000001893588.888985.7143
ENSG00000099901homo_sapiensENSP0000040156466.546860.7914anolis_carolinensisENSACAP0000000781294.387886.2245
ENSG00000099901homo_sapiensENSP0000040156465.467662.9496geospiza_fortisENSGFOP0000001243692.857189.2857
ENSG00000099901homo_sapiensENSP0000040156466.906562.5899taeniopygia_guttataENSTGUP0000000855482.300976.9911
ENSG00000099901homo_sapiensENSP0000040156466.18760.0719salvator_merianaeENSSMRP0000001075888.038379.9043
ENSG00000099901homo_sapiensENSP0000040156465.827361.5108pelodiscus_sinensisENSPSIP0000000230288.83583.0097
ENSG00000099901homo_sapiensENSP0000040156468.345362.5899gopherus_evgoodeiENSGEVP0000502969675.098868.7747
ENSG00000099901homo_sapiensENSP0000040156467.266262.2302chelonoidis_abingdoniiENSCABP0000001060189.047682.381
ENSG00000099901homo_sapiensENSP0000040156466.546862.5899struthio_camelus_australisENSSCUP0000000542689.37284.058
ENSG00000099901homo_sapiensENSP0000040156484.892179.8561anser_brachyrhynchusENSABRP0000001832285.198680.1444
ENSG00000099901homo_sapiensENSP0000040156466.906561.8705strigops_habroptilaENSSHBP0000502141088.995282.2967
ENSG00000099901homo_sapiensENSP0000040156467.266261.8705terrapene_carolina_triunguisENSTMTP0000000811789.047681.9048
ENSG00000099901homo_sapiensENSP0000040156462.589955.036hucho_huchoENSHHUP0000007599182.075572.1698
ENSG00000099901homo_sapiensENSP0000040156462.949655.036pygocentrus_nattereriENSPNAP0000003082383.732173.2057
ENSG00000099901homo_sapiensENSP0000040156440.287832.3741ciona_savignyiENSCSAVP0000000410360.215148.3871
ENSG00000099901homo_sapiensENSP0000040156426.618721.223saccharomyces_cerevisiaeYDR002W36.815929.3532
ENSG00000099901homo_sapiensENSP0000040156419.064714.7482seriola_lalandi_dorsalisENSSLDP0000000224541.085331.7829
ENSG00000099901homo_sapiensENSP0000040156467.266262.5899aquila_chrysaetos_chrysaetosENSACCP0002000468189.473783.2536
ENSG00000099901homo_sapiensENSP0000040156462.589952.518denticeps_clupeoidesENSDCDP0000004000079.452166.6667
ENSG00000099901homo_sapiensENSP0000040156466.546861.8705coturnix_japonicaENSCJPP0000502426188.942382.6923
ENSG00000099901homo_sapiensENSP0000040156452.51842.446paramormyrops_kingsleyaeENSPKIP0000002863759.591848.1633
ENSG00000099901homo_sapiensENSP0000040156465.467656.1151scleropages_formosusENSSFOP0001502696572.5162.1514

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005092enables GDP-dissociation inhibitor activity1IMPHomo_sapiens(9606)Function
GO:0005096contributes_to GTPase activator activity1IBAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634located_in nucleus1TASHomo_sapiens(9606)Component
GO:0005635located_in nuclear envelope1TASHomo_sapiens(9606)Component
GO:0005643part_of nuclear pore1IBAHomo_sapiens(9606)Component
GO:0005737is_active_in cytoplasm3IBA,IDA,TASHomo_sapiens(9606)Component
GO:0005813is_active_in centrosome1IBAHomo_sapiens(9606)Component
GO:0005829located_in cytosol1IDAHomo_sapiens(9606)Component
GO:0006913involved_in nucleocytoplasmic transport1IEAHomo_sapiens(9606)Process
GO:0007165involved_in signal transduction1TASHomo_sapiens(9606)Process
GO:0031267enables small GTPase binding1TASHomo_sapiens(9606)Function
GO:0045296enables cadherin binding1HDAHomo_sapiens(9606)Function
GO:0046604involved_in positive regulation of mitotic centrosome separation1IBAHomo_sapiens(9606)Process

Expression