RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	Cancer
Drug	N.A.
Main interacting RNAs	rRNA
Moonlighting functions	N.A.
Localizations	Stress granule or P-body
BulkPerturb-seq	N.A.

Description

Ensembl ID	ENSG00000061794	Gene ID	60488	Accession	16635
Symbol	MRPS35	Alias		Full Name
Status	Confidence	Length	45474 bases	Strand	Plus strand
Position	12 : 27710822 - 27756295	RNA binding domain	MRP-S28
Summary

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000081029	MRP-S28	PF10213	1.1e-11	1

Showing 1 to 1 of 1 entries

RNA binding proteomes (RBPomes)

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Pubmed ID	Full Name	Cell	Author	Time	Doi
22658674	RIC_PMID22658674_Hela_human	Hela	Alfredo Castello	2012 Jun 8	doi: 10.1016/j.cell.2012.04.031.?Epub 2012 May 31
22681889	RIC_PMID22681889_Hs_HEK293	HEK293	Alexander G Baltz	2012 Jun 8	doi: 10.1016/j.molcel.2012.05.021
26632259	RIC_PMID26632259._Hs_HuH7	HuH7	Benedikt M Beckmann	2015 Dec 3	doi: 10.1038/ncomms10127.
30352994	eRIC_PMID30352994_Jurkat_human	Jurkat	Joel I Perez-Perri?	2018 Oct 23	doi: 10.1038/s41467-018-06557-8
30528433	XRNAX_PMID30528433_Hs_HEK293	HEK293	Jakob Trendel	2019 Jan 10	doi: 10.1016/j.cell.2018.11.004.?Epub 2018 Dec 6
30528433	XRNAX_PMID30528433_Hs_HeLa	HeLa	Jakob Trendel	2019 Jan 10	doi: 10.1016/j.cell.2018.11.004.?Epub 2018 Dec 6
30528433	XRNAX_PMID30528433_Hs_MCF7	MCF7	Jakob Trendel	2019 Jan 10	doi: 10.1016/j.cell.2018.11.004.?Epub 2018 Dec 6
31076284	R.Deep_PMID_31076284_Hs		Maiwen Caudron-Herger	2019 Jul 11	doi: 10.1016/j.molcel.2019.04.018.?Epub 2019 May 7
33235359	RIC_PMID33235359_humanRIC.superset.2021		Fatima Gebauer	2021 Mar	doi: 10.1038/s41576-020-00302-y
33693821	PP.enrichment.RIC_PMID33693821_Hela_human	Hela	Zheng Zhang	2021 Jun 21	doi: 10.1093/nar/gkab156

Showing 1 to 10 of 12 entries

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Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
MRPS35-201	ENST00000081029	1829	323aa	ENSP00000081029
MRPS35-202	ENST00000536569	557	41aa	ENSP00000437990
MRPS35-203	ENST00000538315	1715	194aa	ENSP00000445390
MRPS35-204	ENST00000542199	750	162aa	ENSP00000442137
MRPS35-205	ENST00000542791	466	38aa	ENSP00000437991

Showing 1 to 5 of 5 entries

Gene Model

Click here to download ENSG00000061794's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSG00000061794's PPI file

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000061794	homo_sapiens	ENSP00000081029	97.8328	95.0464	nomascus_leucogenys	ENSNLEP00000047203	97.8328	95.0464
ENSG00000061794	homo_sapiens	ENSP00000081029	100	99.3808	pan_paniscus	ENSPPAP00000001992	100	99.3808
ENSG00000061794	homo_sapiens	ENSP00000081029	99.6904	99.0712	pan_paniscus	ENSPPAP00000005995	99.6904	99.0712
ENSG00000061794	homo_sapiens	ENSP00000081029	97.5232	95.9752	pongo_abelii	ENSPPYP00000028605	97.5232	95.9752
ENSG00000061794	homo_sapiens	ENSP00000081029	99.6904	99.0712	pan_troglodytes	ENSPTRP00000008183	99.6904	99.0712
ENSG00000061794	homo_sapiens	ENSP00000081029	100	99.0712	gorilla_gorilla	ENSGGOP00000003139	100	99.0712
ENSG00000061794	homo_sapiens	ENSP00000081029	75.2322	63.1579	ornithorhynchus_anatinus	ENSOANP00000016646	82.9352	69.6246
ENSG00000061794	homo_sapiens	ENSP00000081029	80.805	66.8731	sarcophilus_harrisii	ENSSHAP00000038541	78.852	65.2568
ENSG00000061794	homo_sapiens	ENSP00000081029	33.7461	29.1022	notamacropus_eugenii	ENSMEUP00000015071	63.7427	54.9708
ENSG00000061794	homo_sapiens	ENSP00000081029	44.582	42.4149	choloepus_hoffmanni	ENSCHOP00000004437	61.0169	58.0508

Showing 1 to 10 of 213 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0005763	part_of mitochondrial small ribosomal subunit	3	IBA,ISS,NAS	Homo_sapiens(9606)	Component
GO:0005743	located_in mitochondrial inner membrane	2	NAS,TAS	Homo_sapiens(9606)	Component
GO:0003723	enables RNA binding	1	HDA	Homo_sapiens(9606)	Function
GO:0003735	enables structural constituent of ribosome	1	IBA	Homo_sapiens(9606)	Function
GO:0032543	involved_in mitochondrial translation	1	NAS	Homo_sapiens(9606)	Process

Showing 1 to 5 of 5 entries

Expression

Contents

Description
RBDs
RBPomes
Transcripts
Gene Model
PPI
Orthologs
Gene Ontology
Expression