RBP Type
Non-canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
N.A.
Localizations
Stress granucle
BulkPerturb-seq
Ensembl ID ENSG00000049449 Gene ID
5954
Accession
9934
Symbol
RCN1
Alias
RCN;RCAL;PIG20;HEL-S-84
Full Name
reticulocalbin 1
Status
Confidence
Length
14649 bases
Strand
Plus strand
Position
11 : 32091074 - 32105722
RNA binding domain
N.A.
Summary
Reticulocalbin 1 is a calcium-binding protein located in the lumen of the ER. The protein contains six conserved regions with similarity to a high affinity Ca(+2)-binding motif, the EF-hand. High conservation of amino acid residues outside of these motifs, in comparison to mouse reticulocalbin, is consistent with a possible biochemical function besides that of calcium binding. In human endothelial and prostate cancer cell lines this protein localizes to the plasma membrane.[provided by RefSeq, Jan 2009]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
RCN1-201
ENST00000054950
2369
331aa
ENSP00000054950
RCN1-206
ENST00000532721
494
19aa
ENSP00000433249
RCN1-207
ENST00000533898
2416
No protein
-
RCN1-205
ENST00000532474
714
No protein
-
RCN1-202
ENST00000527337
737
57aa
ENSP00000436427
RCN1-204
ENST00000531345
2653
No protein
-
RCN1-203
ENST00000528630
549
28aa
ENSP00000433237
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
9443 Echocardiography 3.18247594381643E-5 17903301 9457 Echocardiography 9.0404207864519E-5 17903301 9718 Echocardiography 9.69904164864764E-5 17903301 12316 Depressive Disorder, Major 6.976E-5 17728769 12322 Depressive Disorder, Major 5.681E-5 17728769 36474 Platelet Function Tests 1.2331600E-005 - 46904 Platelet Function Tests 2.0751000E-005 - 60796 Gastrointestinal Microbiome 4E-6 26528553 75636 Tuberculosis 3E-11 22306650 103235 Tuberculosis 3E-6 24057671 103783 Tuberculosis 1E-12 24057671
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0001701 involved_in in utero embryonic development 1 IEA Homo_sapiens(9606) Process GO:0005509 enables calcium ion binding 1 IBA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005783 is_active_in endoplasmic reticulum 2 IBA,IDA Homo_sapiens(9606) Component GO:0005788 located_in endoplasmic reticulum lumen 1 TAS Homo_sapiens(9606) Component GO:0043010 involved_in camera-type eye development 1 IEA Homo_sapiens(9606) Process
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