RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSFCAG00000024876	Gene ID		Accession	-
Symbol	RTL5	Alias	-	Full Name	retrotransposon Gag like 5
Status	Confidence	Length	137065 bases	Strand	Minus strand
Position	X : 61173157 - 61310221	RNA binding domain	Ribosomal_S4e , KOW , RS4NT , S4
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSFCAP00000011170	Ribosomal_S4e	PF00900	4.4e-38	1
ENSFCAP00000011170	KOW	PF00467	1.2e-05	2
ENSFCAP00000011170	RS4NT	PF08071	5.1e-21	3
ENSFCAP00000011170	S4	PF01479	9.8e-06	4
ENSFCAP00000060992	Ribosomal_S4e	PF00900	4.6e-38	1
ENSFCAP00000060992	KOW	PF00467	1.2e-05	2
ENSFCAP00000060992	RS4NT	PF08071	5.2e-21	3
ENSFCAP00000060992	S4	PF01479	1e-05	4
ENSFCAP00000057343	Ribosomal_S4e	PF00900	5.6e-37	1
ENSFCAP00000057343	KOW	PF00467	6.9e-05	2
ENSFCAP00000057343	RS4NT	PF08071	2.5e-20	3
ENSFCAP00000057343	S4	PF01479	3.9e-05	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RTL5-201	ENSFCAT00000025886	3400	759aa	ENSFCAP00000057343
RTL5-202	ENSFCAT00000012043	976	263aa	ENSFCAP00000011170
RTL5-203	ENSFCAT00000072800	865	266aa	ENSFCAP00000060992

Gene Model

Click here to download ENSFCAG00000024876's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSFCAG00000024876's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSFCAG00000024876	felis_catus	ENSFCAP00000046094	25.7627	11.5254	felis_catus	ENSFCAP00000057343	10.0132	4.47958
ENSFCAG00000024876	felis_catus	ENSFCAP00000019168	39.749	27.6151	felis_catus	ENSFCAP00000057343	12.5165	8.69565
ENSFCAG00000024876	felis_catus	ENSFCAP00000017855	54.7945	29.4521	felis_catus	ENSFCAP00000057343	10.5402	5.66535
ENSFCAG00000024876	felis_catus	ENSFCAP00000042577	55.7522	35.3982	felis_catus	ENSFCAP00000057343	8.3004	5.27009
ENSFCAG00000024876	felis_catus	ENSFCAP00000049367	55.7522	35.3982	felis_catus	ENSFCAP00000057343	8.3004	5.27009
ENSFCAG00000024876	felis_catus	ENSFCAP00000046906	19.6931	11.509	felis_catus	ENSFCAP00000057343	20.2899	11.8577

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.7918	55.863	callithrix_jacchus	ENSCJAP00000070653	83.3037	75.3108
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.9236	56.6535	cercocebus_atys	ENSCATP00000041323	82.8924	75.8377
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.7918	56.5217	macaca_mulatta	ENSMMUP00000080719	82.716	75.6614
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	62.0553	56.6535	macaca_nemestrina	ENSMNEP00000028182	83.0688	75.8377
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.9236	56.7852	papio_anubis	ENSPANP00000010306	82.8924	76.0141
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	62.0553	56.6535	mandrillus_leucophaeus	ENSMLEP00000006228	83.0688	75.8377
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.9236	55.863	gorilla_gorilla	ENSGGOP00000033053	82.6011	74.5167
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	45.191	41.6337	pan_paniscus	ENSPPAP00000007247	85.3234	78.607
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.5283	55.5995	pongo_abelii	ENSPPYP00000038159	81.7863	73.9054
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	62.0553	56.39	homo_sapiens	ENSP00000476792	82.7768	75.2197
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	62.1871	56.39	pan_troglodytes	ENSPTRP00000060589	82.9525	75.2197
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	66.9302	63.2411	vulpes_vulpes	ENSVVUP00000035471	88.0416	83.1889
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	66.9302	63.2411	canis_lupus_familiaris	ENSCAFP00845027429	88.0416	83.1889
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	12.5165	12.253	ursus_americanus	ENSUAMP00000019713	98.9583	96.875
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	66.4032	61.3966	ailuropoda_melanoleuca	ENSAMEP00000019811	89.0459	82.3322
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	66.6667	60.7378	mustela_putorius_furo	ENSMPUP00000018373	89.8757	81.8828
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	12.6482	12.6482	panthera_pardus	ENSPPRP00000028295	100	100
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	66.2714	60.7378	equus_caballus	ENSECAP00000088992	89.0266	81.5929
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	50.7246	45.3228	loxodonta_africana	ENSLAFP00000028464	81.741	73.0361
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	66.2714	60.8696	equus_asinus	ENSEASP00005041413	89.0266	81.7699
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	54.5455	47.0356	mesocricetus_auratus	ENSMAUP00000007723	70.6485	60.9215
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	42.556	37.9447	marmota_marmota_marmota	ENSMMMP00000024740	69.1649	61.6702
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.7918	57.0487	delphinapterus_leucas	ENSDLEP00000016821	87.8277	81.0861
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	55.4677	47.5626	mus_spretus	MGP_SPRETEiJ_P0096136	70.1667	60.1667
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	64.5586	58.1028	capra_hircus	ENSCHIP00000005267	85.5148	76.9633
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	55.7312	47.6943	mus_caroli	MGP_CAROLIEiJ_P0092370	70.6177	60.4341
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.9236	57.0487	monodon_monoceros	ENSMMNP00015014116	88.015	81.0861
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	59.1568	51.3834	heterocephalus_glaber_female	ENSHGLP00000055199	71.84	62.4
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	55.7312	47.5626	mus_musculus	ENSMUSP00000109261	70.6177	60.2671
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	57.8393	52.1739	bos_grunniens	ENSBGRP00000040301	78.2531	70.5882
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	8.16864	6.71937	bos_grunniens	ENSBGRP00000040317	53.4483	43.9655
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.7918	56.917	balaenoptera_musculus	ENSBMSP00010027556	87.9925	81.0507
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	64.6904	58.2345	ovis_aries_rambouillet	ENSOARP00020032756	85.6894	77.1379
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	56.1265	48.3531	oryctolagus_cuniculus	ENSOCUP00000020512	77.5956	66.8488
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	56.1265	47.2991	mus_pahari	MGP_PahariEiJ_P0089984	70.5298	59.4371
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.3966	55.5995	rhinolophus_ferrumequinum	ENSRFEP00010000049	82.187	74.4268
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.2648	55.0725	otolemur_garnettii	ENSOGAP00000015559	83.935	75.4513
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	65.2174	59.2885	phocoena_sinus	ENSPSNP00000027196	86.5385	78.6713
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	60.3426	53.0962	bos_taurus	ENSBTAP00000055342	77.3649	68.0743
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	59.8155	52.0422	cavia_porcellus	ENSCPOP00000017901	74.6711	64.9671
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	51.7787	43.083	microtus_ochrogaster	ENSMOCP00000000152	66.4975	55.3299
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	58.1028	50.9881	urocitellus_parryii	ENSUPAP00010021068	65.1403	57.164
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	54.5455	43.8735	octodon_degus	ENSODEP00000003101	73.1449	58.8339
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	40.448	36.7589	ursus_maritimus	ENSUMAP00000006191	72.0657	65.493
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	57.971	50.3294	nannospalax_galili	ENSNGAP00000013049	74.4501	64.6362
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	44.7958	41.502	rhinopithecus_bieti	ENSRBIP00000001497	85	78.75
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	56.6535	49.6706	dipodomys_ordii	ENSDORP00000025397	74.9129	65.6794
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.7918	56.7852	chlorocebus_sabaeus	ENSCSAP00000017887	82.716	76.0141
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	12.6482	12.6482	panthera_tigris_altaica	ENSPTIP00000003559	100	100
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	62.8458	57.3123	moschus_moschiferus	ENSMMSP00000002444	88.6617	80.855
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	55.4677	46.7721	rattus_norvegicus	ENSRNOP00000087547	70.0499	59.0682
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	64.8221	59.025	sus_scrofa	ENSSSCP00000027830	87.234	79.4326
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	12.6482	12.253	physeter_catodon	ENSPCTP00005017165	97.9592	94.898
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	56.7852	47.6943	chinchilla_lanigera	ENSCLAP00000021185	73.928	62.0926
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	64.5586	58.2345	bos_indicus_hybrid	ENSBIXP00005023753	85.3659	77.0035
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.0013	54.809	myotis_lucifugus	ENSMLUP00000022494	83.574	75.0903
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	12.253	11.726	bison_bison_bison	ENSBBBP00000023001	96.875	92.7083
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	54.1502	45.8498	cricetulus_griseus_chok1gshd	ENSCGRP00001008115	68.8442	58.2915
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	62.1871	56.2582	nomascus_leucogenys	ENSNLEP00000022718	82.9525	75.0439
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	62.3188	56.6535	prolemur_simus	ENSPSMP00000020757	83.2747	75.7042
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	65.3491	59.4203	catagonus_wagneri	ENSCWAP00000004038	86.4111	78.5714
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	47.6943	44.137	camelus_dromedarius	ENSCDRP00005013555	91.1839	84.3829
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	44.0053	40.5797	bos_mutus	ENSBMUP00000029278	90.2703	83.2432
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	60.7378	53.8867	cervus_hanglu_yarkandensis	ENSCHYP00000033658	76.8333	68.1667
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	61.7918	56.39	rhinopithecus_roxellana	ENSRROP00000000912	82.716	75.485
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	78.1291	74.4401	panthera_leo	ENSPLOP00000028537	85.942	81.8841
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	12.6482	12.5165	neovison_vison	ENSNVIP00000031720	100	98.9583
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	51.7787	44.4005	peromyscus_maniculatus_bairdii	ENSPEMP00000032671	67.0648	57.5085
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	55.2042	47.5626	mus_spicilegus	ENSMSIP00000026671	69.9499	60.2671
ENSFCAG00000024876	felis_catus	ENSFCAP00000057343	60.4743	52.9644	sciurus_vulgaris	ENSSVLP00005021210	75.3695	66.0098

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression