RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSFCAG00000005251	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2619 bases	Strand	Plus strand
Position	B4 : 134878121 - 134880739	RNA binding domain	APOBEC_N , APOBEC_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSFCAP00000004867	APOBEC_N	PF08210	2.8e-44	1
ENSFCAP00000004867	APOBEC_C	PF05240	7.1e-31	2
ENSFCAP00000034880	APOBEC_N	PF08210	6.1e-39	1
ENSFCAP00000034880	APOBEC_N	PF08210	6.1e-39	2
ENSFCAP00000034880	APOBEC_C	PF05240	4.4e-28	3
ENSFCAP00000059112	APOBEC_N	PF08210	1.1e-38	1
ENSFCAP00000059112	APOBEC_C	PF05240	7.1e-28	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
APOBEC3Z3-203	ENSFCAT00000048019	1194	270aa	ENSFCAP00000034880
APOBEC3Z3-201	ENSFCAT00000077223	1682	319aa	ENSFCAP00000059112
APOBEC3Z3-202	ENSFCAT00000005252	1451	242aa	ENSFCAP00000004867

Gene Model

Click here to download ENSFCAG00000005251's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSFCAG00000005251's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSFCAG00000005251	felis_catus	ENSFCAP00000029015	41.3793	26.2931	felis_catus	ENSFCAP00000059112	30.094	19.1223
ENSFCAG00000005251	felis_catus	ENSFCAP00000008672	38.9831	23.3051	felis_catus	ENSFCAP00000059112	28.8401	17.2414
ENSFCAG00000005251	felis_catus	ENSFCAP00000003787	37.0536	22.3214	felis_catus	ENSFCAP00000059112	26.0188	15.674

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	27.8997	15.9875	sarcophilus_harrisii	ENSSHAP00000043123	30.9028	17.7083
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.558	30.4075	callithrix_jacchus	ENSCJAP00000073454	60	47.3171
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	37.931	30.094	cercocebus_atys	ENSCATP00000012268	60.804	48.2412
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.0658	32.9154	macaca_fascicularis	ENSMFAP00000017385	62.381	50
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	47.3354	37.3041	macaca_mulatta	ENSMMUP00000053576	58.0769	45.7692
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.0658	32.9154	macaca_nemestrina	ENSMNEP00000031743	62.0853	49.763
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	34.4828	25.3918	papio_anubis	ENSPANP00000048484	45.2675	33.3333
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.0658	32.9154	mandrillus_leucophaeus	ENSMLEP00000018470	62.0853	49.763
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	37.6176	29.1536	pan_paniscus	ENSPPAP00000026886	60	46.5
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	39.4984	30.4075	pongo_abelii	ENSPPYP00000041270	59.7156	45.9716
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	36.3636	28.5266	homo_sapiens	ENSP00000411754	63.388	49.7268
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	37.6176	29.1536	pan_troglodytes	ENSPTRP00000083401	60	46.5
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	61.7555	52.0376	vulpes_vulpes	ENSVVUP00000019753	65.4485	55.1495
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	49.5298	40.4389	canis_lupus_familiaris	ENSCAFP00845030766	63.2	51.6
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	45.1411	36.0502	ursus_americanus	ENSUAMP00000004881	65.1584	52.0362
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	55.4859	45.768	ailuropoda_melanoleuca	ENSAMEP00000011384	70.8	58.4
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	44.5141	37.6176	mustela_putorius_furo	ENSMPUP00000013141	37.0757	31.3316
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	55.1724	53.605	panthera_pardus	ENSPPRP00000009485	90.7216	88.1443
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	40.4389	34.4828	equus_caballus	ENSECAP00000034895	52.0161	44.3548
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	37.6176	28.5266	loxodonta_africana	ENSLAFP00000026875	32.6087	24.7283
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	40.1254	34.4828	equus_asinus	ENSEASP00005036918	41.1576	35.3698
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	29.7806	23.511	vicugna_pacos	ENSVPAP00000010345	74.8031	59.0551
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	39.185	31.6614	mesocricetus_auratus	ENSMAUP00000010970	30.2663	24.4552
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.3793	31.0345	marmota_marmota_marmota	ENSMMMP00000015540	56.8966	42.6724
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	44.8276	36.0502	delphinapterus_leucas	ENSDLEP00000014878	26.779	21.5356
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	34.7962	26.3323	mus_spretus	MGP_SPRETEiJ_P0040813	25.2273	19.0909
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	39.4984	31.0345	saimiri_boliviensis_boliviensis	ENSSBOP00000027153	53.1646	41.7722
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.6928	32.9154	tursiops_truncatus	ENSTTRP00000001189	74.7191	58.9888
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	43.2602	35.7367	capra_hircus	ENSCHIP00000032712	36.8984	30.4813
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	35.1097	26.6458	mus_caroli	MGP_CAROLIEiJ_P0039006	25.4545	19.3182
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	44.8276	36.0502	monodon_monoceros	ENSMMNP00015027558	28.0392	22.549
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.8715	29.4671	heterocephalus_glaber_female	ENSHGLP00000024290	59.9034	45.4106
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	35.4232	27.2727	mus_musculus	ENSMUSP00000135027	25.6818	19.7727
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	39.8119	32.2884	aotus_nancymaae	ENSANAP00000015030	56.6964	45.9821
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	45.4545	37.6176	bos_grunniens	ENSBGRP00000004947	59.1837	48.9796
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	27.2727	14.4201	monodelphis_domestica	ENSMODP00000040505	33.4615	17.6923
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.0658	33.2288	balaenoptera_musculus	ENSBMSP00010013875	72.7778	58.8889
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	42.6332	34.7962	ovis_aries_rambouillet	ENSOARP00020015068	36.5591	29.8387
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	33.8558	25.3918	procavia_capensis	ENSPCAP00000014600	62.069	46.5517
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	33.5423	27.5862	oryctolagus_cuniculus	ENSOCUP00000035226	21.063	17.3228
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	36.9906	27.8997	mus_pahari	MGP_PahariEiJ_P0042359	26.6366	20.0903
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	27.5862	15.9875	vombatus_ursinus	ENSVURP00010031524	29.5302	17.1141
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	43.8871	34.4828	rhinolophus_ferrumequinum	ENSRFEP00010002311	65.4206	51.4019
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	44.2006	34.4828	phocoena_sinus	ENSPSNP00000013086	33.813	26.3789
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.6928	35.1097	bos_taurus	ENSBTAP00000003115	34.5455	29.0909
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.2445	32.6019	pteropus_vampyrus	ENSPVAP00000008916	69.3182	59.0909
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	28.2132	15.9875	phascolarctos_cinereus	ENSPCIP00000049844	34.6154	19.6154
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	35.4232	28.8401	carlito_syrichta	ENSTSYP00000023224	62.4309	50.8287
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.558	30.721	cavia_porcellus	ENSCPOP00000008311	30	23.9024
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.558	30.4075	microtus_ochrogaster	ENSMOCP00000025473	29.2857	23.0952
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	33.8558	25.0784	urocitellus_parryii	ENSUPAP00010028216	50.2326	37.2093
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	45.1411	36.3636	ursus_maritimus	ENSUMAP00000019740	68.2464	54.9763
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	37.6176	28.2132	nannospalax_galili	ENSNGAP00000019083	28.6396	21.4797
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	39.4984	31.9749	rhinopithecus_bieti	ENSRBIP00000010473	59.7156	48.3412
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	39.4984	30.094	ictidomys_tridecemlineatus	ENSSTOP00000006364	60.5769	46.1538
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.2445	30.094	dipodomys_ordii	ENSDORP00000022770	32.1053	25.2632
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.0658	33.2288	chlorocebus_sabaeus	ENSCSAP00000002661	62.0853	50.237
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	55.1724	53.9185	panthera_tigris_altaica	ENSPTIP00000009121	90.7216	88.6598
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	42.6332	35.1097	moschus_moschiferus	ENSMMSP00000021032	36.5591	30.1075
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.2445	29.4671	rattus_norvegicus	ENSRNOP00000095626	27.4775	21.1712
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	49.2163	40.1254	sus_scrofa	ENSSSCP00000049864	64.6091	52.6749
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	43.5737	35.1097	physeter_catodon	ENSPCTP00005011753	33.0952	26.6667
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.558	27.8997	tupaia_belangeri	ENSTBEP00000001321	73.6527	53.2934
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	38.2445	31.348	chinchilla_lanigera	ENSCLAP00000024206	60.396	49.505
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	39.185	31.348	cebus_imitator	ENSCCAP00000001319	58.6854	46.9484
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	48.9028	40.7523	bos_indicus_hybrid	ENSBIXP00005043951	39.3939	32.8283
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	0	0	bison_bison_bison	ENSBBBP00000011591	0	0
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	40.7523	34.4828	bison_bison_bison	ENSBBBP00000011581	73.8636	62.5
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	40.1254	31.6614	cricetulus_griseus_chok1gshd	ENSCGRP00001025355	30.9927	24.4552
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	40.4389	31.9749	nomascus_leucogenys	ENSNLEP00000018472	61.1374	48.3412
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	47.0219	37.6176	canis_lupus_dingo	ENSCAFP00020003085	70.4225	56.338
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	43.2602	36.9906	catagonus_wagneri	ENSCWAP00000020400	34.6734	29.6482
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	44.2006	34.7962	camelus_dromedarius	ENSCDRP00005019466	33.3333	26.2411
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	42.0063	35.1097	bos_mutus	ENSBMUP00000000416	34.8052	29.0909
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	49.5298	40.7523	cervus_hanglu_yarkandensis	ENSCHYP00000021689	33.3333	27.4262
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	32.6019	22.884	jaculus_jaculus	ENSJJAP00000014377	28.1843	19.7832
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	39.8119	31.6614	rhinopithecus_roxellana	ENSRROP00000006181	55.2174	43.913
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	45.4545	40.1254	neovison_vison	ENSNVIP00000001830	71.0784	62.7451
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	41.6928	32.6019	peromyscus_maniculatus_bairdii	ENSPEMP00000000666	30.4348	23.7986
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	35.1097	27.2727	mus_spicilegus	ENSMSIP00000034718	25.4545	19.7727
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	34.1693	25.3918	sciurus_vulgaris	ENSSVLP00005019455	23.6957	17.6087
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	26.0188	14.4201	callorhinchus_milii	ENSCMIP00000004961	39.5238	21.9048
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	25.7053	14.7335	latimeria_chalumnae	ENSLACP00000018020	23.8372	13.6628
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	25.7053	15.3605	lepisosteus_oculatus	ENSLOCP00000004258	30.0366	17.9487
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	25.3918	14.7335	xenopus_tropicalis	ENSXETP00000073758	36.4865	21.1712
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	28.5266	16.3009	anolis_carolinensis	ENSACAP00000018261	33.829	19.3309
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	22.2571	11.9122	podarcis_muralis	ENSPMRP00000035742	33.8095	18.0952
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	25.3918	17.5549	paramormyrops_kingsleyae	ENSPKIP00000029857	39.1304	27.0531
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	25.0784	16.9279	scleropages_formosus	ENSSFOP00015009596	40.404	27.2727
ENSFCAG00000005251	felis_catus	ENSFCAP00000059112	25.7053	14.7335	erpetoichthys_calabaricus	ENSECRP00000021015	31.4176	18.0077

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression