RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSFCAG00000002541	Gene ID		Accession	-
Symbol	RPS6	Alias	-	Full Name	ribosomal protein S6
Status	Confidence	Length	4617 bases	Strand	Minus strand
Position	D4 : 46058134 - 46062750	RNA binding domain	Ribosomal_S6e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSFCAP00000002340	Ribosomal_S6e	PF01092	3.3e-58	1
ENSFCAP00000053141	Ribosomal_S6e	PF01092	2.4e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPS6-201	ENSFCAT00000002541	1003	315aa	ENSFCAP00000002340
RPS6-202	ENSFCAT00000068549	299	89aa	ENSFCAP00000053141

Gene Model

Click here to download ENSFCAG00000002541's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSFCAG00000002541's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSFCAG00000002541	felis_catus	ENSFCAP00000033576	88.764	83.1461	felis_catus	ENSFCAP00000002340	25.0794	23.4921
ENSFCAG00000002541	felis_catus	ENSFCAP00000032641	78.8991	76.1468	felis_catus	ENSFCAP00000002340	27.3016	26.3492
ENSFCAG00000002541	felis_catus	ENSFCAP00000056159	82.5243	76.2136	felis_catus	ENSFCAP00000002340	53.9683	49.8413

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.0952	78.0952	choloepus_hoffmanni	ENSCHOP00000004087	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	71.746	71.4286	callithrix_jacchus	ENSCJAP00000041898	97.8355	97.4026
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	75.2381	74.9206	cercocebus_atys	ENSCATP00000019954	97.5309	97.1193
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	macaca_fascicularis	ENSMFAP00000025915	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	77.4603	77.1429	macaca_nemestrina	ENSMNEP00000039054	100	99.5902
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	75.2381	74.6032	gorilla_gorilla	ENSGGOP00000041090	97.5309	96.7078
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.4127	78.4127	pan_paniscus	ENSPPAP00000029363	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	homo_sapiens	ENSP00000369757	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	pan_troglodytes	ENSPTRP00000060553	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.4127	78.0952	canis_lupus_familiaris	ENSCAFP00845032118	99.1968	98.7952
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	ursus_americanus	ENSUAMP00000017030	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	ailuropoda_melanoleuca	ENSAMEP00000040457	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	panthera_pardus	ENSPPRP00000002246	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	equus_caballus	ENSECAP00000013727	99.2032	99.2032
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	60.9524	53.6508	loxodonta_africana	ENSLAFP00000028147	82.4034	72.5322
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	equus_asinus	ENSEASP00005028269	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	vicugna_pacos	ENSVPAP00000005593	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	63.8095	61.2698	mesocricetus_auratus	ENSMAUP00000014559	89.7321	86.1607
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	77.7778	77.7778	mus_spretus	MGP_SPRETEiJ_P0065358	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	69.5238	67.9365	saimiri_boliviensis_boliviensis	ENSSBOP00000002019	96.0526	93.8596
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.7302	78.4127	tursiops_truncatus	ENSTTRP00000001686	100	99.5968
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	78.7302	capra_hircus	ENSCHIP00000006669	97.6471	97.2549
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	heterocephalus_glaber_female	ENSHGLP00000030166	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	mus_musculus	ENSMUSP00000099878	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	76.5079	75.2381	aotus_nancymaae	ENSANAP00000000975	96.7871	95.1807
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	76.8254	76.5079	aotus_nancymaae	ENSANAP00000026225	100	99.5868
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	78.7302	bos_grunniens	ENSBGRP00000003221	100	99.5984
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	balaenoptera_musculus	ENSBMSP00010000728	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	78.7302	ovis_aries_rambouillet	ENSOARP00020028488	100	99.5984
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.0952	78.0952	oryctolagus_cuniculus	ENSOCUP00000020279	98.7952	98.7952
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	36.1905	35.2381	vombatus_ursinus	ENSVURP00010023428	91.2	88.8
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	71.746	69.5238	vombatus_ursinus	ENSVURP00010019441	90.7631	87.9518
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	78.0952	rhinolophus_ferrumequinum	ENSRFEP00010032568	98.8095	97.619
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	otolemur_garnettii	ENSOGAP00000014549	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	81.9048	80.9524	phocoena_sinus	ENSPSNP00000000929	96.6292	95.5056
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	78.7302	bos_taurus	ENSBTAP00000049139	100	99.5984
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	44.7619	44.127	pteropus_vampyrus	ENSPVAP00000013379	57.551	56.7347
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	51.4286	49.5238	phascolarctos_cinereus	ENSPCIP00000011218	82.6531	79.5918
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	62.5397	59.6825	carlito_syrichta	ENSTSYP00000016731	90.367	86.2385
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	77.4603	76.1905	cavia_porcellus	ENSCPOP00000019059	97.992	96.3855
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	microtus_ochrogaster	ENSMOCP00000005155	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	urocitellus_parryii	ENSUPAP00010023925	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	28.254	26.6667	octodon_degus	ENSODEP00000000700	87.2549	82.3529
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	nannospalax_galili	ENSNGAP00000018868	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	rhinopithecus_bieti	ENSRBIP00000028179	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	72.381	71.4286	rhinopithecus_bieti	ENSRBIP00000006604	99.5633	98.2533
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	72.6984	71.4286	ictidomys_tridecemlineatus	ENSSTOP00000028121	97.0339	95.339
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	77.7778	77.7778	panthera_tigris_altaica	ENSPTIP00000008583	98.3936	98.3936
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	23.8095	22.5397	moschus_moschiferus	ENSMMSP00000023084	90.3614	85.5422
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	27.3016	26.9841	rattus_norvegicus	ENSRNOP00000080926	93.4783	92.3913
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	17.7778	16.1905	rattus_norvegicus	ENSRNOP00000065173	80	72.8571
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	sus_scrofa	ENSSSCP00000005557	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.7302	78.7302	physeter_catodon	ENSPCTP00005021230	99.5984	99.5984
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	70.1587	69.8413	ochotona_princeps	ENSOPRP00000000679	91.3223	90.9091
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	44.7619	44.7619	ochotona_princeps	ENSOPRP00000011207	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	48.5714	46.3492	chinchilla_lanigera	ENSCLAP00000015065	85.4749	81.5642
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	cebus_imitator	ENSCCAP00000026763	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	78.7302	bos_indicus_hybrid	ENSBIXP00005021735	100	99.5984
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	78.7302	myotis_lucifugus	ENSMLUP00000006917	100	99.5984
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	67.9365	66.6667	bison_bison_bison	ENSBBBP00000027403	94.6903	92.9204
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	70.4762	67.9365	cricetulus_griseus_chok1gshd	ENSCGRP00001016993	94.0678	90.678
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	66.6667	64.7619	cricetulus_griseus_chok1gshd	ENSCGRP00001027535	93.75	91.0714
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	51.4286	51.4286	canis_lupus_dingo	ENSCAFP00020016188	90.5028	90.5028
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	catagonus_wagneri	ENSCWAP00000015627	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	camelus_dromedarius	ENSCDRP00005001338	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	78.7302	bos_mutus	ENSBMUP00000020343	100	99.5984
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.7302	76.5079	cervus_hanglu_yarkandensis	ENSCHYP00000006407	85.5172	83.1034
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	rhinopithecus_roxellana	ENSRROP00000025541	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	99.0476	99.0476	panthera_leo	ENSPLOP00000010945	99.0476	99.0476
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.4127	78.0952	microcebus_murinus	ENSMICP00000044690	99.1968	98.7952
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	78.0952	77.4603	microcebus_murinus	ENSMICP00000023543	98.7952	97.992
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	79.0476	79.0476	sciurus_vulgaris	ENSSVLP00005028434	100	100
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	77.7778	76.5079	propithecus_coquereli	ENSPCOP00000001014	99.5935	97.9675
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	60.9524	48.5714	caenorhabditis_elegans	Y71A12B.1a.1	78.0488	62.1951
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	67.9365	59.3651	drosophila_melanogaster	FBpp0071087	86.2903	75.4032
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	69.8413	60.3175	ciona_intestinalis	ENSCINP00000003510	88.7097	76.6129
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	67.9365	61.5873	lepisosteus_oculatus	ENSLOCP00000013648	78.1022	70.8029
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	39.0476	37.7778	carassius_auratus	ENSCARP00000116484	93.1818	90.1515
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	16.5079	15.2381	laticauda_laticaudata	ENSLLTP00000016285	60.4651	55.814
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	29.8413	27.9365	laticauda_laticaudata	ENSLLTP00000016276	92.1569	86.2745
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	49.5238	40	anas_platyrhynchos_platyrhynchos	ENSAPLP00000018457	31.7073	25.6098
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	57.7778	46.9841	saccharomyces_cerevisiae	YPL090C	77.1186	62.7119
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	57.7778	46.9841	saccharomyces_cerevisiae	YBR181C	77.1186	62.7119
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	70.4762	60	ciona_savignyi	ENSCSAVP00000012874	89.5161	76.2097
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	23.4921	19.6825	podarcis_muralis	ENSPMRP00000005073	74	62
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	13.9683	12.381	taeniopygia_guttata	ENSTGUP00000021366	61.9718	54.9296
ENSFCAG00000002541	felis_catus	ENSFCAP00000002340	28.5714	26.3492	sinocyclocheilus_grahami	ENSSGRP00000059789	73.7705	68.0328

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression