RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSFALG00000005265	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2345 bases	Strand	Plus strand
Position	4 : 11208490 - 11210834	RNA binding domain	Ribosomal_S18
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSFALP00000005480	Ribosomal_S18	PF01084	1.3e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSFALT00000005506	615	191aa	ENSFALP00000005480

Gene Model

Click here to download ENSFALG00000005265's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSFALG00000005265's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSFALG00000005265

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	50.2618	45.0262	anas_platyrhynchos_platyrhynchos	ENSAPLP00000012330	68.5714	61.4286
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	40.3141	36.1257	geospiza_fortis	ENSGFOP00000009776	66.3793	59.4828
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	49.2147	44.5026	anser_brachyrhynchus	ENSABRP00000017948	61.039	55.1948
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	60.733	58.6387	serinus_canaria	ENSSCAP00000021339	76.8212	74.1722
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	64.9215	62.3037	taeniopygia_guttata	ENSTGUP00000024558	43.8163	42.0495
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	54.4503	50.7853	strigops_habroptila	ENSSHBP00005013212	80.6202	75.1938
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	51.8325	44.5026	gallus_gallus	ENSGALP00010003661	68.2759	58.6207
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	59.6859	57.0681	parus_major	ENSPMJP00000010690	48.7179	46.5812
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	37.6963	callorhinchus_milii	ENSCMIP00000031562	67.1875	56.25
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	46.5969	38.7435	latimeria_chalumnae	ENSLACP00000012765	69.5312	57.8125
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	50.2618	39.267	lepisosteus_oculatus	ENSLOCP00000014907	71.1111	55.5556
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	35.6021	clupea_harengus	ENSCHAP00000060552	63.9706	50
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.9319	33.5079	danio_rerio	ENSDARP00000092236	60.2941	47.0588
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	35.6021	carassius_auratus	ENSCARP00000059072	62.5	50
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	34.555	carassius_auratus	ENSCARP00000016672	62.5	48.5294
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	40.8377	32.4607	astyanax_mexicanus	ENSAMXP00000012577	78.7879	62.6263
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.4084	34.0314	ictalurus_punctatus	ENSIPUP00000005426	78.6408	63.1068
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	47.644	35.6021	electrophorus_electricus	ENSEEEP00000030440	68.4211	51.1278
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	35.0785	oncorhynchus_kisutch	ENSOKIP00005041803	48.8636	38.0682
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	33.5079	esox_lucius	ENSELUP00000025932	64.6617	48.1203
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	33.5079	oncorhynchus_mykiss	ENSOMYP00000091470	61.5942	46.3768
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	43.9791	35.0785	salmo_salar	ENSSSAP00000014061	61.7647	49.2647
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	35.0785	salmo_trutta	ENSSTUP00000081271	54.7771	42.6752
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	35.0785	gadus_morhua	ENSGMOP00000052012	53.7975	42.4051
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	47.1204	34.555	fundulus_heteroclitus	ENSFHEP00000014024	66.6667	48.8889
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	46.5969	34.555	fundulus_heteroclitus	ENSFHEP00000017039	69.5312	51.5625
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	37.1728	28.2723	poecilia_reticulata	ENSPREP00000018585	72.449	55.102
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	46.5969	34.555	xiphophorus_maculatus	ENSXMAP00000012573	57.4194	42.5806
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	34.0314	cyclopterus_lumpus	ENSCLMP00005021863	66.4062	50.7812
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	31.9372	oreochromis_niloticus	ENSONIP00000015770	68.8	48.8
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.9319	33.5079	haplochromis_burtoni	ENSHBUP00000021990	63.0769	49.2308
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	40.8377	30.3665	astatotilapia_calliptera	ENSACLP00000015460	63.4146	47.1545
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	40.3141	29.8429	sparus_aurata	ENSSAUP00010050144	39.6907	29.3814
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	53.4031	46.0733	chrysemys_picta_bellii	ENSCPBP00000010112	62.5767	53.9877
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	48.1675	38.7435	sphenodon_punctatus	ENSSPUP00000018109	67.1533	54.0146
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	35.0785	lates_calcarifer	ENSLCAP00010022397	67.9688	52.3438
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	37.6963	laticauda_laticaudata	ENSLLTP00000004882	68.254	57.1429
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	49.7382	43.4555	crocodylus_porosus	ENSCPRP00005021804	67.3759	58.8652
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	46.5969	39.267	notechis_scutatus	ENSNSUP00000025796	60.9589	51.3699
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	41.8848	35.6021	pseudonaja_textilis	ENSPTXP00000020969	73.3945	62.3853
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	43.9791	35.6021	notamacropus_eugenii	ENSMEUP00000010009	66.1417	53.5433
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	46.0733	37.1728	ornithorhynchus_anatinus	ENSOANP00000052944	66.6667	53.7879
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	38.2199	28.2723	dicentrarchus_labrax	ENSDLAP00005081166	56.1538	41.5385
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	48.6911	39.267	anolis_carolinensis	ENSACAP00000010714	63.6986	51.3699
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	47.1204	37.1728	erpetoichthys_calabaricus	ENSECRP00000012474	52.0231	41.0405
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	32.4607	cyprinodon_variegatus	ENSCVAP00000017127	68.5039	48.8189
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	40.8377	31.4136	takifugu_rubripes	ENSTRUP00000057991	60	46.1538
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.9319	33.5079	neolamprologus_brichardi	ENSNBRP00000007928	63.0769	49.2308
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	39.267	30.8901	oryzias_melastigma	ENSOMEP00000004063	72.1154	56.7308
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	43.9791	32.4607	kryptolebias_marmoratus	ENSKMAP00000022167	65.625	48.4375
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	32.4607	pygocentrus_nattereri	ENSPNAP00000024672	61.1511	44.6043
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	35.6021	seriola_dumerili	ENSSDUP00000021540	67.9688	53.125
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	33.5079	poecilia_latipinna	ENSPLAP00000011973	67.9688	50
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	47.1204	35.0785	poecilia_formosa	ENSPFOP00000002226	58.0645	43.2258
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	43.9791	35.0785	scophthalmus_maximus	ENSSMAP00000042695	64.6154	51.5385
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	41.8848	29.8429	cottoperca_gobio	ENSCGOP00000043203	61.5385	43.8462
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	35.0785	labrus_bergylta	ENSLBEP00000025100	66.9231	51.5385
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	35.0785	labrus_bergylta	ENSLBEP00000028864	66.9231	51.5385
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	47.644	34.555	anabas_testudineus	ENSATEP00000066134	70	50.7692
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	34.555	acanthochromis_polyacanthus	ENSAPOP00000015989	67.4419	51.1628
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	39.7906	29.3194	amphilophus_citrinellus	ENSACIP00000026143	75.2475	55.4455
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	31.4136	oryzias_javanicus	ENSOJAP00000029959	66.4062	46.875
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	46.0733	31.9372	hippocampus_comes	ENSHCOP00000010534	66.6667	46.2121
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	43.4555	33.5079	hucho_hucho	ENSHHUP00000014133	62.8788	48.4848
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	41.8848	33.5079	seriola_lalandi_dorsalis	ENSSLDP00000002544	62.0155	49.6124
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	47.1204	36.1257	podarcis_muralis	ENSPMRP00000035345	62.5	47.9167
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.9319	34.555	stegastes_partitus	ENSSPAP00000011419	63.5659	51.1628
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	52.8796	42.4084	chelonoidis_abingdonii	ENSCABP00000009375	71.1268	57.0423
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.5497	35.0785	paramormyrops_kingsleyae	ENSPKIP00000004768	63.5037	48.9051
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	34.555	cyprinus_carpio_carpio	ENSCCRP00000091188	62.5	48.5294
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	36.1257	cyprinus_carpio_carpio	ENSCCRP00000142480	63.7037	51.1111
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	43.9791	34.0314	amphiprion_ocellaris	ENSAOCP00000010147	65.1163	50.3876
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	43.4555	32.4607	leptobrachium_leishanense	ENSLLEP00000007385	60.1449	44.9275
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	41.3613	31.9372	tetraodon_nigroviridis	ENSTNIP00000008381	60.7692	46.9231
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	35.0785	sinocyclocheilus_grahami	ENSSGRP00000089156	62.963	49.6296
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.9319	33.5079	maylandia_zebra	ENSMZEP00005031219	63.0769	49.2308
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	34.555	denticeps_clupeoides	ENSDCDP00000004882	62.7737	48.1752
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	48.1675	36.6492	mastacembelus_armatus	ENSMAMP00000043501	68.6567	52.2388
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	44.5026	34.0314	myripristis_murdjan	ENSMMDP00005050693	65.3846	50
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	45.0262	31.4136	sander_lucioperca	ENSSLUP00000004062	66.1538	46.1538
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.4084	32.9843	pundamilia_nyererei	ENSPNYP00000014025	62.3077	48.4615
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.9319	32.4607	oncorhynchus_tshawytscha	ENSOTSP00005092678	61.194	46.2687
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.9319	34.555	nothobranchius_furzeri	ENSNFUP00015007686	64.0625	51.5625
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	53.9267	45.0262	gopherus_evgoodei	ENSGEVP00005004444	72.5352	60.5634
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	53.9267	45.5497	terrapene_carolina_triunguis	ENSTMTP00000016310	71.5278	60.4167
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	46.5969	36.6492	scleropages_formosus	ENSSFOP00015056759	65.4412	51.4706
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	38.7435	31.9372	amphiprion_percula	ENSAPEP00000032493	69.8113	57.5472
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	43.4555	33.5079	amphiprion_percula	ENSAPEP00000032302	64.3411	49.6124
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	42.4084	31.9372	betta_splendens	ENSBSLP00000023794	68.6441	51.6949
ENSFALG00000005265	ficedula_albicollis	ENSFALP00000005480	41.3613	31.4136	cynoglossus_semilaevis	ENSCSEP00000001018	56.0284	42.5532

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression