RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSELUG00000004912	Gene ID		Accession	-
Symbol	si	Alias	-	Full Name	si:ch211-153b23.3
Status	Confidence	Length	16379 bases	Strand	Minus strand
Position	LG04 : 851166 - 867544	RNA binding domain	Sua5_yciO_yrdC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSELUP00000028364	Sua5_yciO_yrdC	PF01300	1.3e-32	1
ENSELUP00000073657	Sua5_yciO_yrdC	PF01300	1.4e-32	1
ENSELUP00000045146	Sua5_yciO_yrdC	PF01300	1.4e-32	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSELUT00000044959	3539	769aa	ENSELUP00000073657
-	ENSELUT00000061421	3157	769aa	ENSELUP00000045146
-	ENSELUT00000013559	3052	734aa	ENSELUP00000028364

Gene Model

Click here to download ENSELUG00000004912's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSELUG00000004912's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSELUG00000004912	esox_lucius	ENSELUP00000003771	37.7104	22.4467	esox_lucius	ENSELUP00000073657	43.6931	26.0078
ENSELUG00000004912	esox_lucius	ENSELUP00000018596	34.3234	20.132	esox_lucius	ENSELUP00000073657	13.5241	7.93238

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	73.8622	58.6476	callorhinchus_milii	ENSCMIP00000009483	64.6189	51.3083
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	71.2614	55.9168	latimeria_chalumnae	ENSLACP00000006543	65.6287	51.497
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	57.4772	45.2536	lepisosteus_oculatus	ENSLOCP00000018537	64.4315	50.7289
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.1443	67.6203	clupea_harengus	ENSCHAP00000052209	69.9552	58.296
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	80.7542	68.6606	danio_rerio	ENSDARP00000129937	70.5682	60
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.0143	69.7009	carassius_auratus	ENSCARP00000043742	70.876	60.9784
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.5345	69.4408	carassius_auratus	ENSCARP00000019107	71.4937	60.8894
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.7945	69.5709	astyanax_mexicanus	ENSAMXP00000033723	72.2158	61.4237
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	80.6242	69.1808	ictalurus_punctatus	ENSIPUP00000022462	71.8424	61.6454
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	70.4811	55.6567	gallus_gallus	ENSGALP00010016846	62.0137	48.9703
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	83.225	72.0416	gadus_morhua	ENSGMOP00000046650	70.8749	61.3511
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.1847	70.7412	haplochromis_burtoni	ENSHBUP00000021825	72.0639	62.0296
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	70.6112	58.1274	parus_major	ENSPMJP00000016237	62.2706	51.2615
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.9246	70.3511	astatotilapia_calliptera	ENSACLP00000008661	71.8358	61.6876
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	71.3914	56.1769	ornithorhynchus_anatinus	ENSOANP00000048633	62.7429	49.3714
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.2744	70.6112	xiphophorus_maculatus	ENSXMAP00000040007	71.5922	62.1993
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	83.7451	73.8622	sparus_aurata	ENSSAUP00010035521	72.1165	63.6058
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.0143	71.6515	kryptolebias_marmoratus	ENSKMAP00000009077	70.9567	62.7563
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	85.3056	73.9922	cyclopterus_lumpus	ENSCLMP00005040206	73.4602	63.7178
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.3147	71.7815	fundulus_heteroclitus	ENSFHEP00000026910	71.9318	62.7273
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	89.0767	81.1443	oncorhynchus_mykiss	ENSOMYP00000072796	76.7077	69.8768
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	91.9376	83.8752	oncorhynchus_mykiss	ENSOMYP00000072789	77.6923	70.8791
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.1443	70.091	oryzias_latipes	ENSORLP00000007750	71.7241	61.954
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	90.7672	83.225	salmo_trutta	ENSSTUP00000101152	76.957	70.5623
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	49.935	46.2939	salmo_trutta	ENSSTUP00000088740	74.2747	68.8588
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.0546	71.1313	pygocentrus_nattereri	ENSPNAP00000031933	72.1143	62.5143
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.0546	71.0013	oryzias_melastigma	ENSOMEP00000026043	72.4455	62.6866
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	90.8973	83.6151	salmo_salar	ENSSSAP00000034385	77.0673	70.8931
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	91.1573	83.225	salmo_salar	ENSSSAP00000147483	88.0653	80.402
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	67.1001	52.6658	erpetoichthys_calabaricus	ENSECRP00000018252	68.254	53.5714
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	23.9272	20.9363	seriola_dumerili	ENSSDUP00000009252	65.0177	56.8905
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	24.8375	22.3667	seriola_dumerili	ENSSDUP00000009037	80.9322	72.8814
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.0546	72.3017	labrus_bergylta	ENSLBEP00000035039	72.2795	63.6884
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	71.6515	56.827	struthio_camelus_australis	ENSSCUP00000000605	63.0435	50
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	14.4343	7.28218	saccharomyces_cerevisiae	YGL169W	26.0563	13.1455
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.1443	70.3511	cynoglossus_semilaevis	ENSCSEP00000023290	70.9898	61.5472
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.0546	70.7412	poecilia_latipinna	ENSPLAP00000012903	71.9498	62.0296
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	70.7412	56.0468	coturnix_japonica	ENSCJPP00005021125	60.7821	48.1564
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	71.6515	56.567	anser_brachyrhynchus	ENSABRP00000022603	63.0435	49.7712
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	73.0819	57.7373	xenopus_tropicalis	ENSXETP00000088176	64.8961	51.2702
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	83.225	71.6515	oreochromis_niloticus	ENSONIP00000064622	72.1533	62.1195
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	23.5371	20.9363	dicentrarchus_labrax	ENSDLAP00005019202	79.0393	70.3057
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	84.5254	72.8218	larimichthys_crocea	ENSLCRP00005029280	73.5294	63.3484
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.8349	71.7815	amphiprion_ocellaris	ENSAOCP00000024265	72.4687	62.7986
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	22.7568	20.4161	oryzias_javanicus	ENSOJAP00000003049	72.0165	64.6091
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.1847	70.7412	neolamprologus_brichardi	ENSNBRP00000017313	72.0639	62.0296
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	66.9701	53.9662	taeniopygia_guttata	ENSTGUP00000028920	71.8271	57.8801
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	72.0416	55.1365	leptobrachium_leishanense	ENSLLEP00000018106	63.3143	48.4571
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	71.9116	55.1365	leptobrachium_leishanense	ENSLLEP00000041366	63.2	48.4571
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	71.9116	55.1365	leptobrachium_leishanense	ENSLLEP00000042757	63.2	48.4571
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.1847	71.5215	betta_splendens	ENSBSLP00000035562	71.7367	62.4291
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	83.355	70.4811	scleropages_formosus	ENSSFOP00015016945	73.2571	61.9429
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.8349	72.0416	amphiprion_percula	ENSAPEP00000020601	72.4687	63.0262
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	75.4226	64.6294	amphilophus_citrinellus	ENSACIP00000008924	71.3407	61.1316
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	16.9051	15.9948	gasterosteus_aculeatus	ENSGACP00000024126	94.8905	89.781
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.9246	70.4811	pundamilia_nyererei	ENSPNYP00000000331	71.8358	61.8016
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	26.3979	23.5371	oryzias_sinensis	ENSOSIP00000000537	82.5203	73.5772
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	91.6775	83.8752	oncorhynchus_kisutch	ENSOKIP00005021221	77.4725	70.8791
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	91.5475	83.7451	oncorhynchus_kisutch	ENSOKIP00005021354	71.183	65.1163
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	83.7451	72.6918	anabas_testudineus	ENSATEP00000007065	70.1525	60.8932
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	78.0234	66.9701	paramormyrops_kingsleyae	ENSPKIP00000005996	71.4286	61.3095
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	73.9922	63.9792	tetraodon_nigroviridis	ENSTNIP00000011816	70.5955	61.0422
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	80.8843	69.3108	cyprinus_carpio_carpio	ENSCCRP00000055594	70.7622	60.6371
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.5345	70.091	cyprinus_carpio_carpio	ENSCCRP00000054421	71.4937	61.4595
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.5748	69.8309	denticeps_clupeoides	ENSDCDP00000013317	71.0291	60.0671
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	81.9246	70.7412	cyprinodon_variegatus	ENSCVAP00000017930	71.8358	62.0296
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	83.6151	72.0416	poecilia_formosa	ENSPFOP00000012299	72.4099	62.3874
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	82.0546	70.7412	maylandia_zebra	ENSMZEP00005015259	71.9498	62.0296
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	22.7568	20.5462	seriola_lalandi_dorsalis	ENSSLDP00000010925	88.8325	80.203
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	83.6151	73.9922	seriola_lalandi_dorsalis	ENSSLDP00000010852	73.1513	64.7327
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	32.6398	27.4382	ficedula_albicollis	ENSFALP00000011826	67.655	56.8733
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	84.2653	77.5033	hucho_hucho	ENSHHUP00000005754	76.8683	70.6999
ENSELUG00000004912	esox_lucius	ENSELUP00000073657	17.2952	16.3849	hucho_hucho	ENSHHUP00000018122	97.0803	91.9708

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression