RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSELUG00000001973	Gene ID		Accession	-
Symbol	mrpl42	Alias	-	Full Name	Esox lucius mitochondrial ribosomal protein L42 (mrpl42), mRNA.
Status	Confidence	Length	1756 bases	Strand	Plus strand
Position	LG23 : 10535645 - 10537400	RNA binding domain	MRP-S32
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSELUP00000000369	MRP-S32	PF10210	4.2e-35	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
mrpl42-201	ENSELUT00000019178	540	146aa	ENSELUP00000000369

Gene Model

Click here to download ENSELUG00000001973's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSELUG00000001973's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSELUG00000001973

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	61.6438	44.5205	petromyzon_marinus	ENSPMAP00000008907	58.0645	41.9355
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	52.7397	39.726	eptatretus_burgeri	ENSEBUP00000008669	57.4627	43.2836
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	52.7397	45.2055	lepisosteus_oculatus	ENSLOCP00000018804	61.1111	52.381
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	77.3973	67.1233	clupea_harengus	ENSCHAP00000023444	75.8389	65.7718
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	72.6027	60.274	danio_rerio	ENSDARP00000103369	73.6111	61.1111
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	66.4384	56.8493	carassius_auratus	ENSCARP00000121180	74.0458	63.3588
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	61.6438	53.4247	carassius_auratus	ENSCARP00000018875	68.7023	59.542
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	58.9041	47.2603	astyanax_mexicanus	ENSAMXP00000049896	62.7737	50.365
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	63.6986	51.3699	ictalurus_punctatus	ENSIPUP00000022705	63.2653	51.0204
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	66.4384	51.3699	electrophorus_electricus	ENSEEEP00000016677	67.3611	52.0833
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	61.6438	52.7397	poecilia_reticulata	ENSPREP00000017834	68.1818	58.3333
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	67.8082	60.274	gadus_morhua	ENSGMOP00000003111	68.75	61.1111
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	70.5479	59.589	haplochromis_burtoni	ENSHBUP00000014136	71.5278	60.4167
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	70.5479	59.589	astatotilapia_calliptera	ENSACLP00000039835	71.5278	60.4167
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	54.7945	42.4658	ornithorhynchus_anatinus	ENSOANP00000049592	52.9801	41.0596
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	56.1644	45.8904	meleagris_gallopavo	ENSMGAP00000011853	62.1212	50.7576
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	78.0822	67.1233	sparus_aurata	ENSSAUP00010012731	78.6207	67.5862
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	73.9726	60.9589	takifugu_rubripes	ENSTRUP00000056347	74.4828	61.3793
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	71.9178	63.0137	kryptolebias_marmoratus	ENSKMAP00000018358	73.4266	64.3357
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	75.3425	65.7534	cyclopterus_lumpus	ENSCLMP00005027382	76.9231	67.1329
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	70.5479	58.9041	fundulus_heteroclitus	ENSFHEP00000032296	71.0345	59.3103
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	93.1507	86.3014	oncorhynchus_mykiss	ENSOMYP00000024113	80	74.1176
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	68.4931	58.9041	oryzias_latipes	ENSORLP00000016925	58.8235	50.5882
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	86.9863	80.8219	salmo_trutta	ENSSTUP00000095011	94.0741	87.4074
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	89.0411	83.5616	salmo_trutta	ENSSTUP00000099184	90.2778	84.7222
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	77.3973	64.3836	lates_calcarifer	ENSLCAP00010013384	77.931	64.8276
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	66.4384	51.3699	pygocentrus_nattereri	ENSPNAP00000014798	66.8966	51.7241
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	69.863	60.9589	oryzias_melastigma	ENSOMEP00000009500	70.3448	61.3793
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	65.7534	53.4247	anolis_carolinensis	ENSACAP00000012350	65.7534	53.4247
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	59.589	52.7397	cottoperca_gobio	ENSCGOP00000022848	71.9008	63.6364
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	87.6712	82.1918	salmo_salar	ENSSSAP00000027206	94.8148	88.8889
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	79.4521	67.8082	seriola_dumerili	ENSSDUP00000008110	80	68.2759
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	78.0822	67.8082	labrus_bergylta	ENSLBEP00000038398	77.551	67.3469
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	67.8082	52.7397	cynoglossus_semilaevis	ENSCSEP00000015657	70.2128	54.6099
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	70.5479	60.9589	poecilia_latipinna	ENSPLAP00000000435	71.0345	61.3793
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	76.0274	62.3288	hippocampus_comes	ENSHCOP00000011273	77.0833	63.1944
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	73.9726	64.3836	mastacembelus_armatus	ENSMAMP00000014330	77.6978	67.6259
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	80.8219	69.1781	myripristis_murdjan	ENSMMDP00005009010	80.2721	68.7075
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	62.3288	50	coturnix_japonica	ENSCJPP00005005114	62.3288	50
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	62.3288	46.5753	xenopus_tropicalis	ENSXETP00000062680	61.4865	45.9459
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	76.0274	63.6986	acanthochromis_polyacanthus	ENSAPOP00000008560	77.0833	64.5833
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	77.3973	65.7534	larimichthys_crocea	ENSLCRP00005058638	77.931	66.2069
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	77.3973	66.4384	amphiprion_ocellaris	ENSAOCP00000007777	79.021	67.8322
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	56.8493	50	oryzias_javanicus	ENSOJAP00000046964	75.4545	66.3636
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	69.1781	58.9041	neolamprologus_brichardi	ENSNBRP00000004152	70.1389	59.7222
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	76.0274	67.1233	sander_lucioperca	ENSSLUP00000026108	76.5517	67.5862
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	74.6575	63.6986	betta_splendens	ENSBSLP00000026176	67.284	57.4074
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	63.0137	47.9452	salvator_merianae	ENSSMRP00000014221	63.4483	48.2759
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	76.7123	65.7534	amphiprion_percula	ENSAPEP00000027492	78.3217	67.1329
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	58.2192	52.0548	nothobranchius_furzeri	ENSNFUP00015009577	65.3846	58.4615
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	69.1781	61.6438	scophthalmus_maximus	ENSSMAP00000000403	66.8874	59.6026
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	59.589	54.1096	gasterosteus_aculeatus	ENSGACP00000024868	89.6907	81.4433
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	70.5479	59.589	pundamilia_nyererei	ENSPNYP00000012619	71.5278	60.4167
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	92.4658	86.3014	oncorhynchus_tshawytscha	ENSOTSP00005102420	79.4118	74.1176
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	84.9315	78.7671	oncorhynchus_tshawytscha	ENSOTSP00005024528	88.5714	82.1429
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	67.1233	56.1644	sinocyclocheilus_grahami	ENSSGRP00000111496	71.5328	59.854
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	69.863	60.274	oryzias_sinensis	ENSOSIP00000042406	70.8333	61.1111
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	91.7808	85.6164	oncorhynchus_kisutch	ENSOKIP00005005582	78.8235	73.5294
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	91.7808	86.3014	oncorhynchus_kisutch	ENSOKIP00005020946	93.0556	87.5
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	78.7671	67.1233	anabas_testudineus	ENSATEP00000053347	79.3103	67.5862
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	70.5479	63.0137	paramormyrops_kingsleyae	ENSPKIP00000010939	70.5479	63.0137
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	72.6027	63.0137	cyprinus_carpio_carpio	ENSCCRP00000075668	71.1409	61.745
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	75.3425	63.0137	denticeps_clupeoides	ENSDCDP00000051145	66.6667	55.7576
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	73.2877	63.6986	cyprinodon_variegatus	ENSCVAP00000001619	73.7931	64.1379
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	69.863	60.274	poecilia_formosa	ENSPFOP00000016595	69.3878	59.8639
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	70.5479	59.589	maylandia_zebra	ENSMZEP00005011382	68.6667	58
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	77.3973	65.7534	seriola_lalandi_dorsalis	ENSSLDP00000012760	77.931	66.2069
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	87.6712	80.137	hucho_hucho	ENSHHUP00000003996	86.4865	79.0541
ENSELUG00000001973	esox_lucius	ENSELUP00000000369	86.3014	80.8219	hucho_hucho	ENSHHUP00000036205	85.1351	79.7297

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression