RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSECRG00000011904	Gene ID	114662595	Accession	-
Symbol	uba52	Alias	-	Full Name	ubiquitin A-52 residue ribosomal protein fusion product 1
Status	Confidence	Length	11879 bases	Strand	Plus strand
Position	12 : 127404220 - 127416098	RNA binding domain	Ribosomal_L40e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSECRP00000017834	Ribosomal_L40e	PF01020	2e-32	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
uba52-201	ENSECRT00000018190	481	128aa	ENSECRP00000017834

Gene Model

Click here to download ENSECRG00000011904's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSECRG00000011904's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000016121	33.5484	20.6452	erpetoichthys_calabaricus	ENSECRP00000017834	40.625	25
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000012081	11.5983	7.92079	erpetoichthys_calabaricus	ENSECRP00000017834	64.0625	43.75
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000009822	47.0588	43.7908	erpetoichthys_calabaricus	ENSECRP00000017834	56.25	52.3438
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000011545	10	5.4902	erpetoichthys_calabaricus	ENSECRP00000017834	39.8438	21.875
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000018703	40.6114	34.9345	erpetoichthys_calabaricus	ENSECRP00000017834	72.6562	62.5
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000009834	32.7511	32.7511	erpetoichthys_calabaricus	ENSECRP00000017834	58.5938	58.5938
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000026007	61.5385	55.7692	erpetoichthys_calabaricus	ENSECRP00000017834	75	67.9688
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000001453	95.2381	95.2381	erpetoichthys_calabaricus	ENSECRP00000017834	46.875	46.875
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000018687	75	56.25	erpetoichthys_calabaricus	ENSECRP00000017834	46.875	35.1562
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000028086	54.3478	39.1304	erpetoichthys_calabaricus	ENSECRP00000017834	39.0625	28.125
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000010975	52.0408	37.7551	erpetoichthys_calabaricus	ENSECRP00000017834	39.8438	28.9062
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000010990	63.75	45	erpetoichthys_calabaricus	ENSECRP00000017834	39.8438	28.125
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000010983	63.75	45	erpetoichthys_calabaricus	ENSECRP00000017834	39.8438	28.125
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000013561	88.3495	77.6699	erpetoichthys_calabaricus	ENSECRP00000017834	71.0938	62.5

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	95.3125	92.1875	caenorhabditis_elegans	ZK1010.1.1	95.3125	92.1875
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	98.4375	96.875	drosophila_melanogaster	FBpp0306837	98.4375	96.875
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	95.3125	91.4062	ciona_intestinalis	ENSCINP00000010307	95.3125	91.4062
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	72.6562	70.3125	eptatretus_burgeri	ENSEBUP00000004699	80.8696	78.2609
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	96.875	94.5312	callorhinchus_milii	ENSCMIP00000012025	96.875	94.5312
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	97.6562	96.0938	latimeria_chalumnae	ENSLACP00000003879	97.6562	96.0938
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	98.4375	96.875	latimeria_chalumnae	ENSLACP00000009213	54.5455	53.6797
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	99.2188	danio_rerio	ENSDARP00000060744	100	99.2188
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	99.2188	astyanax_mexicanus	ENSAMXP00000034187	100	99.2188
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	99.2188	carassius_auratus	ENSCARP00000002743	83.6601	83.0065
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	99.2188	carassius_auratus	ENSCARP00000022067	100	99.2188
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	99.2188	carassius_auratus	ENSCARP00000025500	100	99.2188
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	99.2188	98.4375	ictalurus_punctatus	ENSIPUP00000007381	99.2188	98.4375
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	98.4375	electrophorus_electricus	ENSEEEP00000048836	100	98.4375
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	99.2188	97.6562	gadus_morhua	ENSGMOP00000008109	99.2188	97.6562
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	56.25	53.125	heterocephalus_glaber_female	ENSHGLP00000055534	53.3333	50.3704
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	98.4375	sorex_araneus	ENSSARP00000000901	100	98.4375
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	95.3125	90.625	ciona_savignyi	ENSCSAVP00000003728	88.4058	84.058
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	99.2188	97.6562	cyprinodon_variegatus	ENSCVAP00000025559	99.2188	97.6562
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	99.2188	97.6562	tetraodon_nigroviridis	ENSTNIP00000013085	99.2188	97.6562
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	77.3438	72.6562	anser_brachyrhynchus	ENSABRP00000005779	96.1165	90.2913
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	94.5312	89.0625	saccharomyces_cerevisiae	YIL148W	94.5312	89.0625
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	94.5312	89.0625	saccharomyces_cerevisiae	YKR094C	94.5312	89.0625
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	72.6562	71.875	sinocyclocheilus_grahami	ENSSGRP00000083272	97.8947	96.8421
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	99.2188	97.6562	takifugu_rubripes	ENSTRUP00000009801	99.2188	97.6562
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	64.8438	56.25	denticeps_clupeoides	ENSDCDP00000059260	50.9202	44.1718
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	99.2188	97.6562	pygocentrus_nattereri	ENSPNAP00000019133	99.2188	97.6562
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	99.2188	cyprinus_carpio_carpio	ENSCCRP00000013341	87.0748	86.3946
ENSECRG00000011904	erpetoichthys_calabaricus	ENSECRP00000017834	100	99.2188	cyprinus_carpio_carpio	ENSCCRP00000029926	84.2105	83.5526

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression