RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSECAG00000059976	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	22930 bases	Strand	Plus strand
Position	18 : 55602776 - 55625705	RNA binding domain	HnRNPA1 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSECAP00000020855	RRM_1	PF00076	1.8e-33	1
ENSECAP00000020855	RRM_1	PF00076	1.8e-33	2
ENSECAP00000059127	RRM_1	PF00076	4.3e-34	1
ENSECAP00000059127	RRM_1	PF00076	4.3e-34	2
ENSECAP00000066992	RRM_1	PF00076	4.4e-34	1
ENSECAP00000066992	RRM_1	PF00076	4.4e-34	2
ENSECAP00000070429	HnRNPA1	PF11627	4.1e-14	1
ENSECAP00000070429	RRM_1	PF00076	3e-34	2
ENSECAP00000070429	RRM_1	PF00076	3e-34	3
ENSECAP00000070491	HnRNPA1	PF11627	5.5e-12	1
ENSECAP00000070491	RRM_1	PF00076	2.3e-34	2
ENSECAP00000070491	RRM_1	PF00076	2.3e-34	3
ENSECAP00000072514	RRM_1	PF00076	5.3e-34	1
ENSECAP00000072514	RRM_1	PF00076	5.3e-34	2
ENSECAP00000073206	RRM_1	PF00076	5.3e-34	1
ENSECAP00000073206	RRM_1	PF00076	5.3e-34	2
ENSECAP00000076352	HnRNPA1	PF11627	1.1e-12	1
ENSECAP00000076352	RRM_1	PF00076	3e-34	2
ENSECAP00000076352	RRM_1	PF00076	3e-34	3
ENSECAP00000087150	RRM_1	PF00076	5.3e-34	1
ENSECAP00000087150	RRM_1	PF00076	5.3e-34	2
ENSECAP00000087597	RRM_1	PF00076	4e-34	1
ENSECAP00000087597	RRM_1	PF00076	4e-34	2

Showing 1 to 23 of 23 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

Show entries

Search:

Name	Transcript ID	bp	Protein	Translation ID
HNRNPA3-201	ENSECAT00000025078	1047	348aa	ENSECAP00000020855
HNRNPA3-202	ENSECAT00000084904	2139	345aa	ENSECAP00000087597
HNRNPA3-203	ENSECAT00000099634	5339	291aa	ENSECAP00000070491
HNRNPA3-204	ENSECAT00000143059	2812	318aa	ENSECAP00000076352
HNRNPA3-205	ENSECAT00000132096	5629	378aa	ENSECAP00000087150
HNRNPA3-206	ENSECAT00000133550	12812	378aa	ENSECAP00000073206
HNRNPA3-207	ENSECAT00000132536	14799	316aa	ENSECAP00000070429
HNRNPA3-208	ENSECAT00000105278	18254	355aa	ENSECAP00000059127
HNRNPA3-209	ENSECAT00000124048	12347	378aa	ENSECAP00000072514
HNRNPA3-210	ENSECAT00000129993	14495	356aa	ENSECAP00000066992

Showing 1 to 10 of 10 entries

Previous1Next

Gene Model

Click here to download ENSECAG00000059976's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSECAG00000059976's PPI file

Paralogs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSECAG00000059976	equus_caballus	ENSECAP00000048323	19.2405	9.87342	equus_caballus	ENSECAP00000073206	20.1058	10.3175
ENSECAG00000059976	equus_caballus	ENSECAP00000011573	20.5882	11.7647	equus_caballus	ENSECAP00000073206	29.6296	16.9312
ENSECAG00000059976	equus_caballus	ENSECAP00000065359	65.1163	54.1528	equus_caballus	ENSECAP00000073206	51.8519	43.1217
ENSECAG00000059976	equus_caballus	ENSECAP00000020394	27.5766	16.7131	equus_caballus	ENSECAP00000073206	26.1905	15.873
ENSECAG00000059976	equus_caballus	ENSECAP00000010871	28.223	14.2857	equus_caballus	ENSECAP00000073206	21.4286	10.8466
ENSECAG00000059976	equus_caballus	ENSECAP00000033438	43.5696	30.9711	equus_caballus	ENSECAP00000073206	43.9153	31.2169
ENSECAG00000059976	equus_caballus	ENSECAP00000052552	20.7127	11.1359	equus_caballus	ENSECAP00000073206	24.6032	13.2275
ENSECAG00000059976	equus_caballus	ENSECAP00000032515	30.4348	22.6087	equus_caballus	ENSECAP00000073206	27.7778	20.6349
ENSECAG00000059976	equus_caballus	ENSECAP00000038991	47.8261	31.5217	equus_caballus	ENSECAP00000073206	11.6402	7.67196
ENSECAG00000059976	equus_caballus	ENSECAP00000042520	46.4	27.2	equus_caballus	ENSECAP00000073206	15.3439	8.99471

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Orthologs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	98.1481	98.1481	ornithorhynchus_anatinus	ENSOANP00000027945	97.6316	97.6316
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	99.2064	99.2064	sarcophilus_harrisii	ENSSHAP00000043017	98.4252	98.4252
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	98.9418	98.9418	notamacropus_eugenii	ENSMEUP00000012428	98.6807	98.6807
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	99.2064	99.2064	dasypus_novemcinctus	ENSDNOP00000014753	99.2064	99.2064
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	25.9259	22.2222	echinops_telfairi	ENSETEP00000002008	70.5036	60.4317
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	92.0635	91.2698	callithrix_jacchus	ENSCJAP00000025429	98.0282	97.1831
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	98.9418	98.9418	cercocebus_atys	ENSCATP00000016479	98.9418	98.9418
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	98.9418	98.9418	macaca_fascicularis	ENSMFAP00000058142	98.9418	98.9418
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	98.9418	98.9418	macaca_mulatta	ENSMMUP00000002473	98.9418	98.9418
ENSECAG00000059976	equus_caballus	ENSECAP00000073206	80.6878	80.4233	macaca_nemestrina	ENSMNEP00000005915	97.7564	97.4359

Showing 1 to 10 of 178 entries

Previous1 2 3 4 5…18Next

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression