RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSECAG00000053418	Gene ID		Accession	-
Symbol	PAPOLB	Alias	-	Full Name	poly(A) polymerase beta
Status	Confidence	Length	4335 bases	Strand	Minus strand
Position	13 : 3997634 - 4001968	RNA binding domain	PAP_RNA-bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSECAP00000082159	PAP_RNA-bind	PF04926	5e-26	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PAPOLB-201	ENSECAT00000145586	4127	642aa	ENSECAP00000082159

Gene Model

Click here to download ENSECAG00000053418's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSECAG00000053418's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSECAG00000053418	equus_caballus	ENSECAP00000041630	58.4767	48.5258	equus_caballus	ENSECAP00000082159	74.1433	61.5265
ENSECAG00000053418	equus_caballus	ENSECAP00000026878	93.6908	89.2744	equus_caballus	ENSECAP00000082159	46.2617	44.081
ENSECAG00000053418	equus_caballus	ENSECAP00000027900	61.7241	53.4483	equus_caballus	ENSECAP00000082159	27.8816	24.1433

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	87.8505	82.7103	dasypus_novemcinctus	ENSDNOP00000025480	81.1511	76.4029
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	43.4579	39.8754	callithrix_jacchus	ENSCJAP00000073525	91.1765	83.6601
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	82.866	78.0374	macaca_fascicularis	ENSMFAP00000015743	87.3563	82.266
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	89.5639	83.0218	pan_troglodytes	ENSPTRP00000093018	83.6972	77.5837
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	88.785	83.0218	homo_sapiens	ENSP00000384700	89.4819	83.6735
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	94.3925	90.9657	canis_lupus_familiaris	ENSCAFP00845020126	89.645	86.3905
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	45.4829	43.1464	vulpes_vulpes	ENSVVUP00000008155	86.1357	81.7109
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.081	41.9003	ailuropoda_melanoleuca	ENSAMEP00000037959	89.557	85.1266
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.8598	42.8349	ursus_americanus	ENSUAMP00000011245	91.4286	87.3016
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	91.7445	86.9159	felis_catus	ENSFCAP00000055683	83.7838	79.3741
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	11.9938	9.34579	panthera_pardus	ENSPPRP00000013600	73.3333	57.1429
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	11.6822	8.8785	panthera_pardus	ENSPPRP00000014404	68.1818	51.8182
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	43.6137	41.7445	balaenoptera_musculus	ENSBMSP00010024974	94.2761	90.2357
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	70.405	66.8224	balaenoptera_musculus	ENSBMSP00010012034	89.3281	84.7826
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	92.3676	85.6698	mus_pahari	MGP_PahariEiJ_P0060130	92.3676	85.6698
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	93.7695	89.7196	ursus_maritimus	ENSUMAP00000010143	94.9527	90.8517
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	91.2773	86.9159	marmota_marmota_marmota	ENSMMMP00000008128	92.1384	87.7358
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	91.433	87.3832	ovis_aries_rambouillet	ENSOARP00020013053	86.3235	82.5
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	84.7352	78.8162	aotus_nancymaae	ENSANAP00000030660	89.0344	82.8151
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	40.81	39.4081	urocitellus_parryii	ENSUPAP00010014498	92.5795	89.3993
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	24.1433	22.2741	bos_grunniens	ENSBGRP00000032960	93.3735	86.1446
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	40.9657	39.7196	microcebus_murinus	ENSMICP00000045835	93.5943	90.7473
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	42.0561	40.1869	oryctolagus_cuniculus	ENSOCUP00000017147	93.75	89.5833
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	92.5234	88.6293	bos_taurus	ENSBTAP00000062890	86.8421	83.1871
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	42.6791	40.9657	sciurus_vulgaris	ENSSVLP00005022820	86.9841	83.4921
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	92.2118	86.2928	mus_musculus	ENSMUSP00000100595	92.2118	86.2928
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	42.9907	41.2773	bos_mutus	ENSBMUP00000027703	94.5205	90.7534
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	89.5639	82.243	octodon_degus	ENSODEP00000013308	86.9894	79.879
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	42.9907	41.2773	bison_bison_bison	ENSBBBP00000000645	94.5205	90.7534
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	90.81	86.9159	myotis_lucifugus	ENSMLUP00000019113	91.6667	87.7358
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	38.0062	36.6044	phocoena_sinus	ENSPSNP00000020698	81.3333	78.3333
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	90.81	85.0467	dipodomys_ordii	ENSDORP00000021215	91.9558	86.1199
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	92.2118	86.2928	mus_spretus	MGP_SPRETEiJ_P0074737	92.2118	86.2928
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	82.243	78.3489	prolemur_simus	ENSPSMP00000001370	88.2943	84.1137
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	73.053	66.5109	cavia_porcellus	ENSCPOP00000021033	87.5	79.6642
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	91.7445	84.891	jaculus_jaculus	ENSJJAP00000007911	84.8703	78.5303
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	93.1464	87.2274	otolemur_garnettii	ENSOGAP00000016810	84.8227	79.4326
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	90.0312	86.6044	cervus_hanglu_yarkandensis	ENSCHYP00000035408	91.1672	87.6972
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	42.3676	40.4984	monodon_monoceros	ENSMMNP00015000841	93.1507	89.0411
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	92.2118	86.2928	mus_caroli	MGP_CAROLIEiJ_P0071916	92.2118	86.2928
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	43.9252	41.5888	rhinolophus_ferrumequinum	ENSRFEP00010018889	94.3144	89.2977
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	91.1215	86.9159	moschus_moschiferus	ENSMMSP00000025011	92.126	87.874
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	90.4984	83.3333	chinchilla_lanigera	ENSCLAP00000006647	92.6635	85.327
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	9.96885	9.19003	canis_lupus_dingo	ENSCAFP00020021917	85.3333	78.6667
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	90.6542	87.5389	catagonus_wagneri	ENSCWAP00000025735	82.2034	79.3785
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	45.1713	43.1464	neovison_vison	ENSNVIP00000006776	94.1558	89.9351
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	51.4019	38.0062	caenorhabditis_elegans	T15H9.6.1	59.5668	44.0433
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	51.4019	38.3178	caenorhabditis_elegans	F43G6.5.1	59.5668	44.4043
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	56.2305	40.1869	caenorhabditis_elegans	Y32F6A.3.1	55.1145	39.3893
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	65.8878	51.8692	drosophila_melanogaster	FBpp0303281	51.1487	40.266
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	43.4579	32.7103	cyclopterus_lumpus	ENSCLMP00005037493	67.5545	50.8475
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.5483	31.7757	haplochromis_burtoni	ENSHBUP00000013937	71.1443	50.7463
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.8598	31.9315	astatotilapia_calliptera	ENSACLP00000037268	66.055	47.0183
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	43.4579	33.0218	labrus_bergylta	ENSLBEP00000008651	69.75	53
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.8598	31.9315	maylandia_zebra	ENSMZEP00005013592	66.055	47.0183
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	46.5732	31.9315	saccharomyces_cerevisiae	YKR002W	52.6408	36.0915
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.5483	31.6199	neolamprologus_brichardi	ENSNBRP00000025146	66.9789	47.541
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.704	31.6199	pundamilia_nyererei	ENSPNYP00000029857	69.4915	49.1525
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	18.2243	13.7072	larimichthys_crocea	ENSLCRP00005021001	72.6708	54.6584
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	31.7757	25.0779	amphiprion_ocellaris	ENSAOCP00000016740	73.3813	57.9137
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.081	33.3333	amphiprion_ocellaris	ENSAOCP00000013307	62.3348	47.1366
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	30.5296	23.9875	acanthochromis_polyacanthus	ENSAPOP00000034030	76.2646	59.9222
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	42.6791	32.5545	amphiprion_percula	ENSAPEP00000023219	61.1607	46.6518
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.704	42.0561	sus_scrofa_jinhua	ENSSSCP00060014027	92.5806	87.0968
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.704	42.0561	sus_scrofa_largewhite	ENSSSCP00025018749	92.5806	87.0968
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.704	42.0561	sus_scrofa_bamei	ENSSSCP00050002113	92.5806	87.0968
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.5483	41.7445	sus_scrofa_hampshire	ENSSSCP00035024010	92.5566	86.7314
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	43.9252	41.1215	sus_scrofa_wuzhishan	ENSSSCP00005019249	92.1569	86.2745
ENSECAG00000053418	equus_caballus	ENSECAP00000082159	44.3925	41.7445	sus_scrofa_berkshire	ENSSSCP00065030833	92.5325	87.013

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression