RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSECAG00000008676	Gene ID		Accession	-
Symbol	HNRNPA1	Alias	-	Full Name	heteroous nuclear ribonucleoprotein A1
Status	Confidence	Length	7065 bases	Strand	Plus strand
Position	6 : 72010960 - 72018024	RNA binding domain	HnRNPA1 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSECAP00000007189	HnRNPA1	PF11627	9.5e-18	1
ENSECAP00000007189	RRM_1	PF00076	1.3e-35	2
ENSECAP00000007189	RRM_1	PF00076	1.3e-35	3
ENSECAP00000033221	HnRNPA1	PF11627	2.7e-18	1
ENSECAP00000033221	RRM_1	PF00076	7.9e-36	2
ENSECAP00000033221	RRM_1	PF00076	7.9e-36	3
ENSECAP00000052083	HnRNPA1	PF11627	8.6e-18	1
ENSECAP00000052083	RRM_1	PF00076	1e-35	2
ENSECAP00000052083	RRM_1	PF00076	1e-35	3
ENSECAP00000065349	RRM_1	PF00076	6.2e-36	1
ENSECAP00000065349	RRM_1	PF00076	6.2e-36	2
ENSECAP00000073779	HnRNPA1	PF11627	2.5e-18	1
ENSECAP00000073779	RRM_1	PF00076	6.9e-36	2
ENSECAP00000073779	RRM_1	PF00076	6.9e-36	3
ENSECAP00000078104	HnRNPA1	PF11627	2.3e-18	1
ENSECAP00000078104	RRM_1	PF00076	6.1e-36	2
ENSECAP00000078104	RRM_1	PF00076	6.1e-36	3
ENSECAP00000079307	HnRNPA1	PF11627	9e-18	1
ENSECAP00000079307	RRM_1	PF00076	1.1e-35	2
ENSECAP00000079307	RRM_1	PF00076	1.1e-35	3
ENSECAP00000089521	HnRNPA1	PF11627	2.8e-18	1
ENSECAP00000089521	RRM_1	PF00076	8.9e-36	2
ENSECAP00000089521	RRM_1	PF00076	8.9e-36	3

Showing 1 to 23 of 23 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
HNRNPA1-201	ENSECAT00000128767	4061	360aa	ENSECAP00000079307
HNRNPA1-202	ENSECAT00000123330	4447	307aa	ENSECAP00000073779
HNRNPA1-203	ENSECAT00000009443	1897	373aa	ENSECAP00000007189
HNRNPA1-204	ENSECAT00000077779	1822	348aa	ENSECAP00000052083
HNRNPA1-205	ENSECAT00000037222	1242	320aa	ENSECAP00000033221
HNRNPA1-206	ENSECAT00000142879	1176	338aa	ENSECAP00000089521
HNRNPA1-207	ENSECAT00000130665	1167	295aa	ENSECAP00000078104
HNRNPA1-208	ENSECAT00000106641	1161	293aa	ENSECAP00000065349

Showing 1 to 8 of 8 entries

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Gene Model

Click here to download ENSECAG00000008676's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSECAG00000008676's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSECAG00000008676	equus_caballus	ENSECAP00000004771	94.4251	93.0314	equus_caballus	ENSECAP00000007189	72.6542	71.5818
ENSECAG00000008676	equus_caballus	ENSECAP00000025300	100	100	equus_caballus	ENSECAP00000007189	64.6113	64.6113
ENSECAG00000008676	equus_caballus	ENSECAP00000048323	20	9.36709	equus_caballus	ENSECAP00000007189	21.1796	9.91957
ENSECAG00000008676	equus_caballus	ENSECAP00000011573	20.9559	12.3162	equus_caballus	ENSECAP00000007189	30.563	17.9625
ENSECAG00000008676	equus_caballus	ENSECAP00000065359	62.7907	50.4983	equus_caballus	ENSECAP00000007189	50.6702	40.7507
ENSECAG00000008676	equus_caballus	ENSECAP00000020394	28.6908	16.9916	equus_caballus	ENSECAP00000007189	27.6139	16.3539
ENSECAG00000008676	equus_caballus	ENSECAP00000010871	29.6167	13.9373	equus_caballus	ENSECAP00000007189	22.7882	10.7239
ENSECAG00000008676	equus_caballus	ENSECAP00000033438	44.8819	29.6588	equus_caballus	ENSECAP00000007189	45.8445	30.2949
ENSECAG00000008676	equus_caballus	ENSECAP00000052552	21.3808	11.804	equus_caballus	ENSECAP00000007189	25.7373	14.2091
ENSECAG00000008676	equus_caballus	ENSECAP00000032515	32.1739	23.1884	equus_caballus	ENSECAP00000007189	29.7587	21.4477

Showing 1 to 10 of 30 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	75.8713	74.5308	dasypus_novemcinctus	ENSDNOP00000024720	92.1824	90.5537
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	72.3861	71.5818	echinops_telfairi	ENSETEP00000000989	74.3802	73.5537
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	99.7319	99.7319	cercocebus_atys	ENSCATP00000041806	100	100
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	79.3566	79.3566	macaca_fascicularis	ENSMFAP00000024414	99.6633	99.6633
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	99.7319	99.7319	macaca_fascicularis	ENSMFAP00000016862	100	100
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	85.5228	85.2547	macaca_mulatta	ENSMMUP00000039316	99.6875	99.375
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	72.3861	70.2413	macaca_nemestrina	ENSMNEP00000039631	95.4064	92.5795
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	99.7319	99.7319	papio_anubis	ENSPANP00000002828	100	100
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	99.7319	99.7319	mandrillus_leucophaeus	ENSMLEP00000040789	100	100
ENSECAG00000008676	equus_caballus	ENSECAP00000007189	85.5228	85.2547	gorilla_gorilla	ENSGGOP00000002992	99.6875	99.375

Showing 1 to 10 of 173 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression