RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSEBUG00000012585	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	105806 bases	Strand	Plus strand
Position	FYBX02010453.1 : 230291 - 336096	RNA binding domain	SERRATE_Ars2_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSEBUP00000020296	SERRATE_Ars2_N	PF12066	1.4e-11	1
ENSEBUP00000020282	SERRATE_Ars2_N	PF12066	1.2e-10	1
ENSEBUP00000020274	SERRATE_Ars2_N	PF12066	5.7e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSEBUT00000020850	2917	205aa	ENSEBUP00000020274
-	ENSEBUT00000020858	1013	253aa	ENSEBUP00000020282
-	ENSEBUT00000020872	3231	206aa	ENSEBUP00000020296

Gene Model

Click here to download ENSEBUG00000012585's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSEBUG00000012585's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000012585	eptatretus_burgeri	ENSEBUP00000021168	5.36278	4.10095	eptatretus_burgeri	ENSEBUP00000020282	6.71937	5.13834
ENSEBUG00000012585	eptatretus_burgeri	ENSEBUP00000023296	0.985222	0.985222	eptatretus_burgeri	ENSEBUP00000020282	0.790514	0.790514
ENSEBUG00000012585	eptatretus_burgeri	ENSEBUP00000013517	7.40741	4.88889	eptatretus_burgeri	ENSEBUP00000020282	19.7628	13.0435

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000012585	eptatretus_burgeri	ENSEBUP00000020282	42.6877	33.5968	caenorhabditis_elegans	E01A2.2a.1	15.1685	11.9382
ENSEBUG00000012585	eptatretus_burgeri	ENSEBUP00000020282	47.4308	36.7589	drosophila_melanogaster	FBpp0085356	12.7253	9.86214
ENSEBUG00000012585	eptatretus_burgeri	ENSEBUP00000020282	42.2925	32.8063	ciona_intestinalis	ENSCINP00000007200	12.4854	9.68495
ENSEBUG00000012585	eptatretus_burgeri	ENSEBUP00000020282	43.8735	33.2016	ciona_savignyi	ENSCSAVP00000014334	12.306	9.31264

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression