| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSEBUG00000007562 | Gene ID |
|
Accession |
- |
| Symbol |
|
Alias |
- |
Full Name |
NA |
| Status |
Confidence |
Length |
46010 bases |
Strand |
Minus strand |
| Position |
FYBX02010024.1 : 1137670 - 1183679 |
RNA binding domain |
TDP43_N , RRM_1 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSEBUP00000011822 |
TDP43_N |
PF18694 |
2.7e-26 |
1 |
| ENSEBUP00000011822 |
RRM_1 |
PF00076 |
6.5e-29 |
2 |
| ENSEBUP00000011822 |
RRM_1 |
PF00076 |
6.5e-29 |
3 |
| ENSEBUP00000011805 |
TDP43_N |
PF18694 |
5e-26 |
1 |
| ENSEBUP00000011805 |
RRM_1 |
PF00076 |
3.4e-29 |
2 |
| ENSEBUP00000011805 |
RRM_1 |
PF00076 |
3.4e-29 |
3 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
ENSEBUT00000012381 |
1397 |
365aa |
ENSEBUP00000011805 |
| - |
ENSEBUT00000012398 |
2594 |
277aa |
ENSEBUP00000011822 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000000162 | 77.7143 | 72.5714 | eptatretus_burgeri | ENSEBUP00000011805 | 74.5205 | 69.589 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000025362 | 43.8283 | 33.0948 | eptatretus_burgeri | ENSEBUP00000011805 | 67.1233 | 50.6849 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000023202 | 12.6113 | 7.12166 | eptatretus_burgeri | ENSEBUP00000011805 | 23.2877 | 13.1507 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000008452 | 14.2322 | 7.11611 | eptatretus_burgeri | ENSEBUP00000011805 | 20.8219 | 10.411 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000017910 | 18.9802 | 10.1983 | eptatretus_burgeri | ENSEBUP00000011805 | 18.3562 | 9.86301 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000010985 | 20.6049 | 11.5312 | eptatretus_burgeri | ENSEBUP00000011805 | 29.863 | 16.7123 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000014186 | 25.1282 | 14.359 | eptatretus_burgeri | ENSEBUP00000011805 | 13.4247 | 7.67123 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000005575 | 24.1379 | 15.2709 | eptatretus_burgeri | ENSEBUP00000011805 | 13.4247 | 8.49315 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000013724 | 13.4831 | 7.41573 | eptatretus_burgeri | ENSEBUP00000011805 | 16.4384 | 9.0411 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000008420 | 12.9573 | 6.40244 | eptatretus_burgeri | ENSEBUP00000011805 | 23.2877 | 11.5068 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000023936 | 9.76562 | 5.07812 | eptatretus_burgeri | ENSEBUP00000011805 | 20.5479 | 10.6849 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000019421 | 19.4969 | 9.74843 | eptatretus_burgeri | ENSEBUP00000011805 | 16.9863 | 8.49315 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000012909 | 24.4032 | 12.2016 | eptatretus_burgeri | ENSEBUP00000011805 | 25.2055 | 12.6027 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000025980 | 25.3425 | 12.6712 | eptatretus_burgeri | ENSEBUP00000011805 | 20.274 | 10.137 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000000191 | 24.1486 | 11.7647 | eptatretus_burgeri | ENSEBUP00000011805 | 21.3699 | 10.411 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000009035 | 26.3941 | 13.0112 | eptatretus_burgeri | ENSEBUP00000011805 | 19.4521 | 9.58904 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000025940 | 21.3483 | 9.66292 | eptatretus_burgeri | ENSEBUP00000011805 | 26.0274 | 11.7808 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000004576 | 23.3083 | 11.0276 | eptatretus_burgeri | ENSEBUP00000011805 | 25.4795 | 12.0548 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000004827 | 23.7726 | 11.1111 | eptatretus_burgeri | ENSEBUP00000011805 | 25.2055 | 11.7808 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000024581 | 22.8395 | 11.7284 | eptatretus_burgeri | ENSEBUP00000011805 | 10.137 | 5.20548 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000022370 | 18.6495 | 9.00322 | eptatretus_burgeri | ENSEBUP00000011805 | 31.7808 | 15.3425 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000001035 | 18.8498 | 9.42492 | eptatretus_burgeri | ENSEBUP00000011805 | 32.3288 | 16.1644 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000011805 | 45.7534 | 28.7671 | caenorhabditis_elegans | F44G4.4c.1 | 40.3382 | 25.3623 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000011805 | 61.9178 | 43.8356 | drosophila_melanogaster | FBpp0088568 | 42.5612 | 30.1318 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000011805 | 51.2329 | 36.1644 | drosophila_melanogaster | FBpp0305038 | 58.805 | 41.5094 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000011805 | 60.274 | 41.9178 | ciona_intestinalis | ENSCINP00000000071 | 50 | 34.7727 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000011805 | 75.0685 | 65.2055 | petromyzon_marinus | ENSPMAP00000009765 | 81.791 | 71.0448 |
| ENSEBUG00000007562 | eptatretus_burgeri | ENSEBUP00000011805 | 60.274 | 41.3699 | ciona_savignyi | ENSCSAVP00000015064 | 51.0441 | 35.0348 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
