RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSEBUG00000007355	Gene ID	100332599	Accession	-
Symbol	ascc3	Alias	-	Full Name	activating signal cointegrator 1 complex subunit 3
Status	Confidence	Length	40949 bases	Strand	Plus strand
Position	FYBX02009650.1 : 3038639 - 3079587	RNA binding domain	ResIII , DEAD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSEBUP00000011476	ResIII	PF04851	7.1e-11	1
ENSEBUP00000011476	DEAD	PF00270	1.3e-24	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSEBUT00000012046	2956	726aa	ENSEBUP00000011476

Gene Model

Click here to download ENSEBUG00000007355's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSEBUG00000007355's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000011748	5.83116	2.48042	eptatretus_burgeri	ENSEBUP00000011476	18.4573	7.85124
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000022232	6.71141	2.18121	eptatretus_burgeri	ENSEBUP00000011476	11.0193	3.58127
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000025187	0	0	eptatretus_burgeri	ENSEBUP00000011476	0	0
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000023197	22.3706	14.6912	eptatretus_burgeri	ENSEBUP00000011476	18.4573	12.1212
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000026846	24.936	16.9086	eptatretus_burgeri	ENSEBUP00000011476	40.2204	27.2727
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000004970	33.6957	16.8478	eptatretus_burgeri	ENSEBUP00000011476	8.53994	4.26997
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000009532	0.208768	0	eptatretus_burgeri	ENSEBUP00000011476	0.137741	0
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000009179	9.21569	4.11765	eptatretus_burgeri	ENSEBUP00000011476	6.47383	2.89256
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000020819	7.86408	3.20388	eptatretus_burgeri	ENSEBUP00000011476	11.157	4.54545
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000001947	1.92308	1.49573	eptatretus_burgeri	ENSEBUP00000011476	1.23967	0.964187
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000006565	0.719424	0.479616	eptatretus_burgeri	ENSEBUP00000011476	0.413223	0.275482
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000015507	1.03627	0.690846	eptatretus_burgeri	ENSEBUP00000011476	0.826446	0.550964

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000011476	71.3499	51.1019	caenorhabditis_elegans	Y54E2A.4a.1	25.6817	18.3937
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000011476	79.0634	61.9835	drosophila_melanogaster	FBpp0082601	26.2941	20.6138
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000011476	20.1102	15.978	ciona_intestinalis	ENSCINP00000031503	83.4286	66.2857
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000011476	23.8292	21.7631	ciona_intestinalis	ENSCINP00000033683	82.7751	75.5981
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000011476	86.9146	76.1708	petromyzon_marinus	ENSPMAP00000002373	55.3995	48.5514
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000011476	79.2011	65.5647	ciona_savignyi	ENSCSAVP00000013054	31.9444	26.4444
ENSEBUG00000007355	eptatretus_burgeri	ENSEBUP00000011476	68.7328	48.7603	saccharomyces_cerevisiae	YGR271W	25.3686	17.997

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression