RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSEBUG00000003580	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	11590 bases	Strand	Plus strand
Position	FYBX02010656.1 : 2970191 - 2981780	RNA binding domain	RRM_5 , RRM_8 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSEBUP00000005228	RRM_5	PF13893	1e-07	1
ENSEBUP00000005228	RRM_8	PF11835	1.6e-11	2
ENSEBUP00000005228	RRM_1	PF00076	1.6e-15	3
ENSEBUP00000005228	RRM_1	PF00076	1.6e-15	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSEBUT00000005666	708	235aa	ENSEBUP00000005228

Gene Model

Click here to download ENSEBUG00000003580's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSEBUG00000003580's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000022507	23.8372	13.3721	eptatretus_burgeri	ENSEBUP00000005228	52.3404	29.3617
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000002211	9.77199	5.53746	eptatretus_burgeri	ENSEBUP00000005228	12.766	7.23404
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000016068	38.1148	34.6311	eptatretus_burgeri	ENSEBUP00000005228	79.1489	71.9149
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000004222	64.186	52.093	eptatretus_burgeri	ENSEBUP00000005228	58.7234	47.6596
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000019911	4.83092	3.38164	eptatretus_burgeri	ENSEBUP00000005228	4.25532	2.97872
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000013181	3.48259	1.99005	eptatretus_burgeri	ENSEBUP00000005228	2.97872	1.70213

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000005228	60.4255	40	caenorhabditis_elegans	C44B7.2a.2	23.7856	15.7454
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000005228	46.383	35.7447	drosophila_melanogaster	FBpp0300947	19.7464	15.2174
ENSEBUG00000003580	eptatretus_burgeri	ENSEBUP00000005228	82.9787	74.4681	petromyzon_marinus	ENSPMAP00000010123	37.428	33.5893

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression