RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSEBUG00000003379	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1475 bases	Strand	Minus strand
Position	FYBX02009877.1 : 72977 - 74451	RNA binding domain	SAP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSEBUP00000004877	SAP	PF02037	2.2e-09	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSEBUT00000005315	300	99aa	ENSEBUP00000004877

Gene Model

Click here to download ENSEBUG00000003379's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSEBUG00000003379's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000003379

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000003379	eptatretus_burgeri	ENSEBUP00000004877	44.4444	32.3232	oreochromis_niloticus	ENSONIP00000036646	65.6716	47.7612
ENSEBUG00000003379	eptatretus_burgeri	ENSEBUP00000004877	49.4949	33.3333	heterocephalus_glaber_female	ENSHGLP00000000975	44.5455	30
ENSEBUG00000003379	eptatretus_burgeri	ENSEBUP00000004877	37.3737	30.303	heterocephalus_glaber_female	ENSHGLP00000032635	59.6774	48.3871
ENSEBUG00000003379	eptatretus_burgeri	ENSEBUP00000004877	33.3333	25.2525	heterocephalus_glaber_female	ENSHGLP00000056720	58.9286	44.6429

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression