RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSEBUG00000002973	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	27608 bases	Strand	Plus strand
Position	FYBX02007741.1 : 1419063 - 1446670	RNA binding domain	RRM_8 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSEBUP00000004222	RRM_8	PF11835	6.7e-12	1
ENSEBUP00000004222	RRM_1	PF00076	4.2e-09	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSEBUT00000004646	648	215aa	ENSEBUP00000004222

Gene Model

Click here to download ENSEBUG00000002973's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSEBUG00000002973's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000022507	21.5116	12.9845	eptatretus_burgeri	ENSEBUP00000004222	51.6279	31.1628
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000002211	10.4235	4.56026	eptatretus_burgeri	ENSEBUP00000004222	14.8837	6.51163
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000005228	58.7234	47.6596	eptatretus_burgeri	ENSEBUP00000004222	64.186	52.093
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000016068	30.7377	26.2295	eptatretus_burgeri	ENSEBUP00000004222	69.7674	59.5349
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000019911	4.83092	2.89855	eptatretus_burgeri	ENSEBUP00000004222	4.65116	2.7907
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000013181	4.97512	1.99005	eptatretus_burgeri	ENSEBUP00000004222	4.65116	1.86047

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000004222	59.5349	40.9302	caenorhabditis_elegans	C44B7.2a.2	21.4405	14.7404
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000004222	49.7674	36.2791	drosophila_melanogaster	FBpp0300947	19.3841	14.1304
ENSEBUG00000002973	eptatretus_burgeri	ENSEBUP00000004222	49.7674	38.1395	ciona_savignyi	ENSCSAVP00000008246	24.263	18.5941

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression