RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSDORG00000025518	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	767 bases	Strand	Minus strand
Position	KN672419.1 : 3699281 - 3700047	RNA binding domain	KH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSDORP00000024511	KH_2	PF07650	3.4e-07	1
ENSDORP00000016234	KH_2	PF07650	6.6e-07	1
ENSDORP00000020475	KH_2	PF07650	1.1e-06	1
ENSDORP00000020534	KH_2	PF07650	1.2e-06	1
ENSDORP00000025603	KH_2	PF07650	1.2e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSDORT00000036268	417	138aa	ENSDORP00000020534
-	ENSDORT00000030210	387	128aa	ENSDORP00000020475
-	ENSDORT00000026377	261	86aa	ENSDORP00000024511
-	ENSDORT00000027746	465	154aa	ENSDORP00000025603
-	ENSDORT00000036090	327	108aa	ENSDORP00000016234

Gene Model

Click here to download ENSDORG00000025518's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSDORG00000025518's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000002794	59.2593	56.3786	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000017589	65.873	60.3175	dipodomys_ordii	ENSDORP00000025603	53.8961	49.3507
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000023488	23.5632	13.2184	dipodomys_ordii	ENSDORP00000025603	26.6234	14.9351

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	notamacropus_eugenii	ENSMEUP00000010558	59.2593	56.3786
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	82.4675	77.2727	choloepus_hoffmanni	ENSCHOP00000004720	57.9909	54.3379
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	80.5195	71.4286	dasypus_novemcinctus	ENSDNOP00000032615	50.6122	44.898
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	50.6493	48.0519	cercocebus_atys	ENSCATP00000002745	47.561	45.122
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	44.8052	42.8571	macaca_fascicularis	ENSMFAP00000039612	89.6104	85.7143
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	macaca_mulatta	ENSMMUP00000036826	59.2593	56.3786
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	48.7013	46.1039	macaca_nemestrina	ENSMNEP00000040701	45.7317	43.2927
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	79.8701	75.3247	mandrillus_leucophaeus	ENSMLEP00000040588	54.4248	51.3274
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	44.8052	40.9091	canis_lupus_familiaris	ENSCAFP00845037238	45.098	41.1765
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	47.4026	42.2078	vulpes_vulpes	ENSVVUP00000025132	48.6667	43.3333
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	44.8052	39.6104	felis_catus	ENSFCAP00000030418	46.9388	41.4966
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	44.1558	38.961	panthera_leo	ENSPLOP00000005065	46.5753	41.0959
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	50.6493	44.8052	panthera_pardus	ENSPPRP00000004769	48.4472	42.8571
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	equus_asinus	ENSEASP00005020725	51.2456	48.7544
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	68.8312	64.9351	oryctolagus_cuniculus	ENSOCUP00000044347	54.0816	51.0204
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	marmota_marmota_marmota	ENSMMMP00000011026	59.2593	56.3786
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	70.1299	64.9351	mesocricetus_auratus	ENSMAUP00000015709	54	50
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	mus_spicilegus	ENSMSIP00000032663	59.2593	56.3786
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	sorex_araneus	ENSSARP00000006343	59.751	56.8465
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	monodelphis_domestica	ENSMODP00000008611	59.2593	56.3786
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	46.7532	44.1558	sciurus_vulgaris	ENSSVLP00005009016	49.3151	46.5753
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	83.7662	74.6753	microcebus_murinus	ENSMICP00000039943	54.8936	48.9362
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	90.9091	84.4156	cebus_imitator	ENSCCAP00000006731	53.6398	49.8084
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	51.2987	47.4026	vombatus_ursinus	ENSVURP00010007928	49.0683	45.3416
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	45.4545	41.5584	vombatus_ursinus	ENSVURP00010003617	46.9799	42.953
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	54.5455	50.6493	rhinopithecus_bieti	ENSRBIP00000002430	50	46.4286
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	69.4805	60.3896	myotis_lucifugus	ENSMLUP00000018751	44.5833	38.75
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	70.1299	61.6883	myotis_lucifugus	ENSMLUP00000018632	44.8133	39.4191
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	41.5584	38.961	phascolarctos_cinereus	ENSPCIP00000025254	37.6471	35.2941
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	46.1039	42.8571	phascolarctos_cinereus	ENSPCIP00000030287	47.0199	43.7086
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	49.3507	44.8052	prolemur_simus	ENSPSMP00000003396	71.028	64.486
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	86.3636	72.0779	caenorhabditis_elegans	C23G10.3.1	53.8462	44.9393
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	85.0649	76.6234	drosophila_melanogaster	FBpp0312066	53.252	47.9675
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	88.3117	80.5195	ciona_intestinalis	ENSCINP00000010313	51.711	47.1483
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	87.013	77.9221	petromyzon_marinus	ENSPMAP00000008596	67	60
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	46.1039	38.961	eptatretus_burgeri	ENSEBUP00000005415	39.2265	33.1492
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	94.1558	89.6104	callorhinchus_milii	ENSCMIP00000043843	58	55.2
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	fundulus_heteroclitus	ENSFHEP00000034432	58.7755	55.9184
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	92.8571	88.3117	notechis_scutatus	ENSNSUP00000023821	58.8477	55.9671
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	92.8571	88.3117	pseudonaja_textilis	ENSPTXP00000021463	58.8477	55.9671
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	92.8571	88.3117	naja_naja	ENSNNAP00000012024	57.2	54.4
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	86.3636	77.9221	ciona_savignyi	ENSCSAVP00000005843	51.751	46.6926
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	93.5065	88.961	nothobranchius_furzeri	ENSNFUP00015032038	57.1429	54.3651
ENSDORG00000025518	dipodomys_ordii	ENSDORP00000025603	80.5195	64.2857	saccharomyces_cerevisiae	YNL178W	51.6667	41.25

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression