Description

Ensembl ID ENSDORG00000006894 Gene ID 105981290 Accession -
Symbol Alias - Full Name LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
Status Confidence Length 7425 bases Strand Plus strand
Position KN672358.1 : 833804 - 841228 RNA binding domain LSM
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSDORP00000020405 LSM PF01423 3.9e-20 1
ENSDORP00000006460 LSM PF01423 5.4e-20 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSDORT00000030672 641 102aa ENSDORP00000020405
- ENSDORT00000006893 345 114aa ENSDORP00000006460

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSDORG00000006894dipodomys_ordiiENSDORP0000002466688.76485.3933dipodomys_ordiiENSDORP0000000646069.298266.6667

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210583.3333sarcophilus_harrisiiENSSHAP0000002757794.117693.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646066.666762.2807ursus_americanusENSUAMP0000002191966.666762.2807
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646065.789563.1579ailuropoda_melanoleucaENSAMEP0000004371358.593856.25
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210578.9474felis_catusENSFCAP0000005157184.210578.9474
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210578.0702panthera_leoENSPLOP0000001860884.210578.0702
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210578.0702panthera_pardusENSPPRP0000001918584.210578.0702
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.964984.2105delphinapterus_leucasENSDLEP0000001305093.333391.4286
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646064.912362.2807physeter_catodonENSPCTP0000503098166.071463.3929
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646070.175464.0351equus_asinusENSEASP0000502262364.516158.871
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646068.421164.0351equus_caballusENSECAP0000008300344.318241.4773
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.964984.2105sus_scrofaENSSSCP0000007437093.333391.4286
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333marmota_marmota_marmotaENSMMMP00000013064100100
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646073.684270.1754cricetulus_griseus_chok1gshdENSCGRP0000100926392.307787.9121
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210583.3333monodelphis_domesticaENSMODP0000003989294.117693.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210582.4561otolemur_garnettiiENSOGAP0000001835597.959295.9184
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646081.578979.8246vombatus_ursinusENSVURP0001003208291.176589.2157
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210583.3333vombatus_ursinusENSVURP0001002057194.117693.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333vicugna_pacosENSVPAP00000009970100100
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646071.052663.1579bos_grunniensENSBGRP0000003087139.901535.468
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210583.3333phascolarctos_cinereusENSPCIP0000004347694.117693.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646074.561460.5263caenorhabditis_elegansY62E10A.12a.283.333367.6471
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646078.070265.7895drosophila_melanogasterFBpp008389386.407872.8155
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646081.578977.193eptatretus_burgeriENSEBUP0000000759091.176586.2745
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646065.789561.4035callorhinchus_miliiENSCMIP0000004783635.54533.1754
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646082.456181.5789lepisosteus_oculatusENSLOCP0000001671792.156991.1765
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.087783.3333clupea_harengusENSCHAP0000005903188.990887.156
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.087782.4561danio_rerioENSDARP0000010449595.09892.1569
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646086.842180.7018carassius_auratusENSCARP0000004723195.192388.4615
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.087781.5789carassius_auratusENSCARP0000011421795.09891.1765
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210582.4561astyanax_mexicanusENSAMXP0000004603794.117692.1569
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333381.5789ictalurus_punctatusENSIPUP0000001346793.137391.1765
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.087782.4561electrophorus_electricusENSEEEP0000005012093.269290.3846
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333381.5789esox_luciusENSELUP0000001959493.137391.1765
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210580.7018oncorhynchus_kisutchENSOKIP0000500958392.307788.4615
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646086.842181.5789oncorhynchus_mykissENSOMYP0000007142770.212865.9574
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210581.5789salmo_salarENSSSAP0000011173971.641869.403
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646062.280757.8947salmo_truttaENSSTUP0000003558486.585480.4878
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646082.456180.7018gadus_morhuaENSGMOP0000003877577.68676.0331
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018fundulus_heteroclitusENSFHEP0000000949893.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018poecilia_reticulataENSPREP0000003318093.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018xiphophorus_maculatusENSXMAP0000000916793.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210579.8246oryzias_latipesENSORLP0000004285594.117689.2157
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210579.8246cyclopterus_lumpusENSCLMP0000500442892.307787.5
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646082.456180.7018oreochromis_niloticusENSONIP0000000046687.850585.9813
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018oreochromis_niloticusENSONIP0000002667193.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018astatotilapia_callipteraENSACLP0000000250492.23389.3204
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018haplochromis_burtoniENSHBUP0000003467893.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.087782.4561sparus_aurataENSSAUP0001000058988.181885.4545
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018lates_calcariferENSLCAP0001004189391.346288.4615
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333xenopus_tropicalisENSXETP0000011654393.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333chrysemys_picta_belliiENSCPBP0000002020093.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333crocodylus_porosusENSCPRP0000502536393.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333sphenodon_punctatusENSSPUP0000002219698.958398.9583
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646063.157963.1579laticauda_laticaudataENSLLTP0000002330783.720983.7209
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333notechis_scutatusENSNSUP0000000249293.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333pseudonaja_textilisENSPTXP0000000413793.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333anas_platyrhynchos_platyrhynchosENSAPLP0000001433193.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333meleagris_gallopavoENSMGAP0000000791793.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333parus_majorENSPMJP0000001760070.895570.8955
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210583.3333serinus_canariaENSSCAP0000000633393.203992.233
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333coturnix_japonicaENSCJPP0000501995093.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333anolis_carolinensisENSACAP0000001326393.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210581.5789cynoglossus_semilaevisENSCSEP0000002362772.180569.9248
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646088.596583.3333acanthochromis_polyacanthusENSAPOP0000001588667.333363.3333
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333naja_najaENSNNAP0000002957093.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333podarcis_muralisENSPMRP0000000716593.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333pelodiscus_sinensisENSPSIP0000001767793.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018neolamprologus_brichardiENSNBRP0000001856993.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333salvator_merianaeENSSMRP0000000300693.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646062.280754.386salvator_merianaeENSSMRP0000001638078.02268.1319
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646076.315870.1754ciona_savignyiENSCSAVP0000001622183.653876.9231
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018mastacembelus_armatusENSMAMP0000006478092.23389.3204
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018dicentrarchus_labraxENSDLAP0000506877389.622686.7924
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210582.4561denticeps_clupeoidesENSDCDP0000005278580.672378.9916
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646081.578979.8246nothobranchius_furzeriENSNFUP0001503107994.89892.8571
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018poecilia_formosaENSPFOP0000000833593.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210582.4561scleropages_formosusENSSFOP0001501092194.117692.1569
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.964982.4561maylandia_zebraENSMZEP0000502223970.503667.6259
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646082.456178.0702oryzias_javanicusENSOJAP0000004720786.238581.6514
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018amphiprion_ocellarisENSAOCP0000000426193.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018gasterosteus_aculeatusENSGACP0000000456493.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646081.578979.8246sander_luciopercaENSSLUP0000004175186.915985.0467
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018hucho_huchoENSHHUP0000008938293.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.087781.5789amphilophus_citrinellusENSACIP0000000580267.832265.035
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646071.052664.9123sinocyclocheilus_grahamiENSSGRP0000000122677.884671.1538
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210580.7018larimichthys_croceaENSLCRP0000506564890.56686.7924
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646086.842184.2105struthio_camelus_australisENSSCUP0000001082368.7566.6667
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333chelonoidis_abingdoniiENSCABP0000000570093.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646068.421164.0351ficedula_albicollisENSFALP0000002555355.319151.773
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333379.8246cottoperca_gobioENSCGOP0000004703893.137389.2157
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210582.4561pygocentrus_nattereriENSPNAP0000001724393.203991.2621
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646080.701880.7018leptobrachium_leishanenseENSLLEP0000003379990.196190.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018betta_splendensENSBSLP0000001932791.346288.4615
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.087780.7018oryzias_sinensisENSOSIP0000002385492.38187.619
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333gopherus_evgoodeiENSGEVP0000500900793.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018amphiprion_perculaENSAPEP0000002620593.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646086.842185.0877terrapene_carolina_triunguisENSTMTP0000001561770.714369.2857
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.964984.2105paramormyrops_kingsleyaeENSPKIP0000002500987.585.7143
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018poecilia_latipinnaENSPLAP0000001997793.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210579.8246oryzias_melastigmaENSOMEP0000000103294.117689.2157
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.964982.4561myripristis_murdjanENSMMDP0000502569875.384672.3077
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.087780.7018scophthalmus_maximusENSSMAP0000004013896.039691.0891
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333taeniopygia_guttataENSTGUP0000000857993.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646082.456179.8246kryptolebias_marmoratusENSKMAP0000002043792.156989.2157
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646082.456179.8246tetraodon_nigroviridisENSTNIP0000000829092.156989.2157
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646085.964982.4561pundamilia_nyerereiENSPNYP0000001258370.503667.6259
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018seriola_lalandi_dorsalisENSSLDP0000000807293.137390.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018seriola_dumeriliENSSDUP0000000822983.333380.7018
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646071.929869.2982labrus_bergyltaENSLBEP0000002808958.992856.8345
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646080.701880.7018erpetoichthys_calabaricusENSECRP0000002951390.196190.1961
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646075.438671.0526stegastes_partitusENSSPAP0000000121586.868781.8182
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333strigops_habroptilaENSSHBP0000502163593.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646084.210584.2105geospiza_fortisENSGFOP0000001293293.203993.2039
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018anabas_testudineusENSATEP0000000732291.346288.4615
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333aquila_chrysaetos_chrysaetosENSACCP0002001411393.137393.1373
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646082.456179.8246cyprinodon_variegatusENSCVAP0000002352592.156989.2157
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333380.7018takifugu_rubripesENSTRUP0000005990991.346288.4615
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333379.8246hippocampus_comesENSHCOP0000002427993.137389.2157
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646086.842181.5789oncorhynchus_tshawytschaENSOTSP0000506874969.230865.035
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646086.842181.5789oncorhynchus_tshawytschaENSOTSP0000505580469.230865.035
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646066.666760.5263oncorhynchus_tshawytschaENSOTSP0000500684784.444476.6667
ENSDORG00000006894dipodomys_ordiiENSDORP0000000646083.333383.3333anser_brachyrhynchusENSABRP0000001154793.137393.1373

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression