RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSDORG00000006246	Gene ID	105993419	Accession	-
Symbol	Tpm2	Alias	-	Full Name	tropomyosin 2
Status	Confidence	Length	8347 bases	Strand	Minus strand
Position	KN672441.1 : 4208569 - 4216915	RNA binding domain	Tropomyosin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSDORP00000005846	Tropomyosin	PF00261	1.7e-97	1
ENSDORP00000019591	Tropomyosin	PF00261	3e-90	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Tpm2-201	ENSDORT00000036434	1161	284aa	ENSDORP00000019591
Tpm2-202	ENSDORT00000006245	855	284aa	ENSDORP00000005846

Gene Model

Click here to download ENSDORG00000006246's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSDORG00000006246's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000020696	80.5447	70.428	dipodomys_ordii	ENSDORP00000019591	72.8873	63.7324
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000005812	83.4483	74.4828	dipodomys_ordii	ENSDORP00000019591	42.6056	38.0282
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000002291	80.0613	71.4724	dipodomys_ordii	ENSDORP00000019591	91.9014	82.0423

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	100	99.6479	macaca_mulatta	ENSMMUP00000021441	100	99.6479
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	70.4225	63.0282	macaca_nemestrina	ENSMNEP00000014494	87.7193	78.5088
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	32.3944	31.6901	canis_lupus_familiaris	ENSCAFP00845012983	100	97.8261
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	39.7887	33.8028	delphinapterus_leucas	ENSDLEP00000000668	73.3766	62.3377
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	69.3662	61.9718	balaenoptera_musculus	ENSBMSP00010018737	92.4883	82.6291
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	92.2535	bos_taurus	ENSBTAP00000043502	95.0704	92.2535
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	100	100	capra_hircus	ENSCHIP00000013157	100	100
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	100	99.6479	cricetulus_griseus_chok1gshd	ENSCGRP00001004248	100	99.6479
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	91.9014	mesocricetus_auratus	ENSMAUP00000023695	95.0704	91.9014
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	91.9014	mus_spretus	MGP_SPRETEiJ_P0064474	95.0704	91.9014
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	92.2535	90.493	heterocephalus_glaber_female	ENSHGLP00000038008	69.8667	68.5333
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	90.493	89.7887	octodon_degus	ENSODEP00000019111	98.8462	98.0769
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	98.9437	98.2394	monodelphis_domestica	ENSMODP00000042047	98.9437	98.2394
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	99.6479	99.2958	ursus_maritimus	ENSUMAP00000008913	99.6479	99.2958
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	100	100	catagonus_wagneri	ENSCWAP00000005979	100	100
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	91.9014	chlorocebus_sabaeus	ENSCSAP00000006695	95.0704	91.9014
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	86.6197	85.2113	microcebus_murinus	ENSMICP00000024372	95.3488	93.7984
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	91.9014	mus_pahari	MGP_PahariEiJ_P0057753	95.0704	91.9014
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	92.2535	neovison_vison	ENSNVIP00000021201	69.2308	67.1795
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	90.1408	85.2113	moschus_moschiferus	ENSMMSP00000028138	75.0733	70.9677
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	99.2958	98.5916	vombatus_ursinus	ENSVURP00010019148	99.2958	98.5916
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	91.9014	mus_musculus	ENSMUSP00000030184	95.0704	91.9014
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	99.6479	99.6479	monodon_monoceros	ENSMMNP00015024947	99.6479	99.6479
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	94.7183	91.5493	cavia_porcellus	ENSCPOP00000026725	94.7183	91.5493
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	91.9014	mus_caroli	MGP_CAROLIEiJ_P0062030	95.0704	91.9014
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	92.2535	ictidomys_tridecemlineatus	ENSSTOP00000004545	95.0704	92.2535
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	95.0704	92.2535	nannospalax_galili	ENSNGAP00000006564	95.0704	92.2535
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	61.2676	55.6338	rattus_norvegicus	ENSRNOP00000077136	82.4645	74.8815
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	100	100	cervus_hanglu_yarkandensis	ENSCHYP00000027702	100	100
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	84.1549	76.7606	nomascus_leucogenys	ENSNLEP00000043596	89.1791	81.3433
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	90.8451	89.4366	phascolarctos_cinereus	ENSPCIP00000029087	89.5833	88.1944
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	72.8873	52.1127	caenorhabditis_elegans	Y105E8B.1d.1	72.8873	52.1127
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	67.2535	45.7746	drosophila_melanogaster	FBpp0089270	67.2535	45.7746
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	71.4789	50.7042	drosophila_melanogaster	FBpp0088904	28.5513	20.2532
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	50	29.2254	ciona_intestinalis	ENSCINP00000017815	58.6777	34.2975
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	59.1549	41.1972	petromyzon_marinus	ENSPMAP00000003415	70.8861	49.3671
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	69.3662	53.169	eptatretus_burgeri	ENSEBUP00000016007	79.7571	61.1336
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	58.0986	35.5634	eptatretus_burgeri	ENSEBUP00000018927	63.7066	38.9961
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	59.1549	48.9437	callorhinchus_milii	ENSCMIP00000001733	81.9512	67.8049
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	90.8451	85.2113	lepisosteus_oculatus	ENSLOCP00000013495	90.8451	85.2113
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	90.1408	82.3944	esox_lucius	ENSELUP00000073404	83.3876	76.2215
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	83.8028	77.4648	oreochromis_niloticus	ENSONIP00000049469	75.7962	70.0637
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	88.7324	81.6901	astatotilapia_calliptera	ENSACLP00000027196	84.2809	77.592
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	86.9718	81.338	xenopus_tropicalis	ENSXETP00000058250	81.7881	76.4901
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	97.5352	95.0704	chrysemys_picta_bellii	ENSCPBP00000034484	97.5352	95.0704
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	28.169	27.4648	sphenodon_punctatus	ENSSPUP00000022241	94.1176	91.7647
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	41.9014	40.493	sphenodon_punctatus	ENSSPUP00000022238	93.7008	90.5512
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	91.1972	85.2113	laticauda_laticaudata	ENSLLTP00000021485	91.1972	85.2113
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	91.1972	85.2113	notechis_scutatus	ENSNSUP00000000339	91.1972	85.2113
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	91.1972	85.2113	pseudonaja_textilis	ENSPTXP00000016756	91.1972	85.2113
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	94.0141	88.3803	gallus_gallus	ENSGALP00010014906	94.0141	88.3803
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	98.2394	95.0704	parus_major	ENSPMJP00000021126	98.2394	95.0704
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	98.2394	94.3662	coturnix_japonica	ENSCJPP00005006998	98.2394	94.3662
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	93.662	87.6761	acanthochromis_polyacanthus	ENSAPOP00000028034	93.662	87.6761
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	89.7887	85.5634	salvator_merianae	ENSSMRP00000015319	66.4062	63.2812
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	76.0563	61.2676	ciona_savignyi	ENSCSAVP00000018448	75.7895	61.0526
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	62.6761	45.4225	ciona_savignyi	ENSCSAVP00000006827	68.9922	50
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	80.2817	66.1972	ciona_savignyi	ENSCSAVP00000007166	80.2817	66.1972
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	93.662	87.3239	maylandia_zebra	ENSMZEP00005012476	93.662	87.3239
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	93.662	87.6761	amphiprion_ocellaris	ENSAOCP00000013560	93.662	87.6761
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	89.0845	81.338	gasterosteus_aculeatus	ENSGACP00000024603	89.0845	81.338
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	94.7183	88.0282	hucho_hucho	ENSHHUP00000011586	94.7183	88.0282
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	89.4366	82.0423	sinocyclocheilus_grahami	ENSSGRP00000064010	86.6894	79.5222
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	79.9296	73.9437	chelonoidis_abingdonii	ENSCABP00000024444	91.5323	84.6774
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	80.9859	73.9437	ficedula_albicollis	ENSFALP00000033949	48.9362	44.6809
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	79.9296	73.9437	gopherus_evgoodei	ENSGEVP00005024207	91.5323	84.6774
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	79.9296	73.9437	terrapene_carolina_triunguis	ENSTMTP00000029209	91.5323	84.6774
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	88.3803	81.6901	paramormyrops_kingsleyae	ENSPKIP00000000787	65.3646	60.4167
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	92.6056	86.6197	seriola_lalandi_dorsalis	ENSSLDP00000029850	92.6056	86.6197
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	92.6056	86.6197	hippocampus_comes	ENSHCOP00000024848	92.6056	86.6197
ENSDORG00000006246	dipodomys_ordii	ENSDORP00000019591	71.831	62.3239	anser_brachyrhynchus	ENSABRP00000019683	82.9268	71.9512

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression