RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSDORG00000004527	Gene ID	105982532	Accession	-
Symbol	Snrpn	Alias	-	Full Name	small nuclear ribonucleoprotein polypeptide N
Status	Confidence	Length	5082 bases	Strand	Plus strand
Position	KN672361.1 : 10591114 - 10596195	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSDORP00000004237	LSM	PF01423	5.9e-20	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Snrpn-201	ENSDORT00000004527	923	240aa	ENSDORP00000004237

Gene Model

Click here to download ENSDORG00000004527's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSDORG00000004527's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000022395	96.5217	92.1739	dipodomys_ordii	ENSDORP00000004237	92.5	88.3333

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	97.9167	95	sarcophilus_harrisii	ENSSHAP00000011953	97.9167	95
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	97.0833	96.6667	choloepus_hoffmanni	ENSCHOP00000001628	87.594	87.218
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	98.75	98.3333	dasypus_novemcinctus	ENSDNOP00000025369	97.1311	96.7213
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	98.3333	erinaceus_europaeus	ENSEEUP00000006755	99.5816	98.7448
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	77.9167	77.5	erinaceus_europaeus	ENSEEUP00000007143	99.4681	98.9362
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	callithrix_jacchus	ENSCJAP00000039038	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	95.4167	95	callithrix_jacchus	ENSCJAP00000091117	96.6245	96.2025
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	cercocebus_atys	ENSCATP00000017219	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	macaca_fascicularis	ENSMFAP00000030186	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	50	44.5833	macaca_mulatta	ENSMMUP00000070804	72.2892	64.4578
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	macaca_nemestrina	ENSMNEP00000014334	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	papio_anubis	ENSPANP00000016140	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	mandrillus_leucophaeus	ENSMLEP00000029270	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	70	65.4167	gorilla_gorilla	ENSGGOP00000037336	84.4221	78.8945
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	73.75	67.0833	pan_paniscus	ENSPPAP00000021666	80.8219	73.516
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	73.3333	67.5	pan_troglodytes	ENSPTRP00000084242	80.3653	73.9726
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	pongo_abelii	ENSPPYP00000027556	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	homo_sapiens	ENSP00000375105	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	51.25	46.6667	canis_lupus_familiaris	ENSCAFP00845008475	49.3976	44.9799
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	94.1667	94.1667	vulpes_vulpes	ENSVVUP00000024527	92.6229	92.6229
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	93.75	92.5	ursus_americanus	ENSUAMP00000020677	78.3972	77.3519
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	ailuropoda_melanoleuca	ENSAMEP00000007414	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	58.75	52.9167	mustela_putorius_furo	ENSMPUP00000007058	68.1159	61.3527
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	59.1667	51.25	felis_catus	ENSFCAP00000044303	63.3929	54.9107
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	panthera_leo	ENSPLOP00000004768	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	57.9167	51.25	panthera_leo	ENSPLOP00000027146	52.8517	46.7681
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	62.0833	56.25	panthera_pardus	ENSPPRP00000013881	76.8041	69.5876
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	tursiops_truncatus	ENSTTRP00000010395	87.8229	87.8229
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	95.8333	95.8333	delphinapterus_leucas	ENSDLEP00000019504	99.1379	99.1379
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	87.5	85.4167	physeter_catodon	ENSPCTP00005012229	93.75	91.5179
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	98.75	98.75	physeter_catodon	ENSPCTP00005012468	97.1311	97.1311
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	20.8333	16.25	balaenoptera_musculus	ENSBMSP00010011033	79.3651	61.9048
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	46.25	45	balaenoptera_musculus	ENSBMSP00010012222	90.2439	87.8049
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	loxodonta_africana	ENSLAFP00000007931	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	equus_asinus	ENSEASP00005026212	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	equus_caballus	ENSECAP00000015877	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	61.6667	55.4167	procavia_capensis	ENSPCAP00000005659	60.4082	54.2857
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	91.25	91.25	sus_scrofa	ENSSSCP00000021510	87.6	87.6
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.1667	camelus_dromedarius	ENSCDRP00005005252	79.9331	79.5987
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	bos_taurus	ENSBTAP00000010856	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	capra_hircus	ENSCHIP00000017774	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	ovis_aries_rambouillet	ENSOARP00020010229	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	85	85	oryctolagus_cuniculus	ENSOCUP00000032298	99.5122	99.5122
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	marmota_marmota_marmota	ENSMMMP00000021783	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	98.75	98.75	cricetulus_griseus_chok1gshd	ENSCGRP00001003434	96.3415	96.3415
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	70	70	urocitellus_parryii	ENSUPAP00010008727	71.7949	71.7949
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	mesocricetus_auratus	ENSMAUP00000000029	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	mus_spretus	MGP_SPRETEiJ_P0083252	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	93.3333	92.5	heterocephalus_glaber_female	ENSHGLP00000027758	94.5148	93.6709
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	100	100	octodon_degus	ENSODEP00000018296	100	100
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	octodon_degus	ENSODEP00000026652	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	mus_spicilegus	ENSMSIP00000018041	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	mus_spicilegus	ENSMSIP00000022283	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	77.9167	77.9167	sorex_araneus	ENSSARP00000000067	78.2427	78.2427
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	93.3333	90.4167	monodelphis_domestica	ENSMODP00000049062	82.0513	79.4872
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	aotus_nancymaae	ENSANAP00000033135	88.806	88.806
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	otolemur_garnettii	ENSOGAP00000006612	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	80.8333	79.1667	rhinolophus_ferrumequinum	ENSRFEP00010028082	62.987	61.6883
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	ursus_maritimus	ENSUMAP00000035591	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	catagonus_wagneri	ENSCWAP00000008898	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	98.75	98.3333	saimiri_boliviensis_boliviensis	ENSSBOP00000016486	98.75	98.3333
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	saimiri_boliviensis_boliviensis	ENSSBOP00000000093	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	bos_mutus	ENSBMUP00000036142	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	chlorocebus_sabaeus	ENSCSAP00000002699	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	sciurus_vulgaris	ENSSVLP00005014671	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	21.6667	18.75	bos_indicus_hybrid	ENSBIXP00005040961	80	69.2308
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	microcebus_murinus	ENSMICP00000037669	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	58.75	58.75	pteropus_vampyrus	ENSPVAP00000003844	52.4164	52.4164
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	mus_pahari	MGP_PahariEiJ_P0016764	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	neovison_vison	ENSNVIP00000019775	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	cebus_imitator	ENSCCAP00000012919	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	93.75	93.75	panthera_tigris_altaica	ENSPTIP00000001775	90	90
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	propithecus_coquereli	ENSPCOP00000006223	88.1919	88.1919
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	22.0833	20	moschus_moschiferus	ENSMMSP00000005649	82.8125	75
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	81.6667	77.9167	canis_lupus_dingo	ENSCAFP00020030865	73.1343	69.7761
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	rhinopithecus_roxellana	ENSRROP00000022598	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	rhinopithecus_bieti	ENSRBIP00000036293	97.541	97.541
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	56.25	55.4167	vicugna_pacos	ENSVPAP00000007864	50	49.2593
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	microtus_ochrogaster	ENSMOCP00000016459	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	mus_musculus	ENSMUSP00000096003	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	23.3333	21.25	monodon_monoceros	ENSMMNP00015008893	86.1538	78.4615
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	98.75	98.75	phocoena_sinus	ENSPSNP00000011592	97.1311	97.1311
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	cavia_porcellus	ENSCPOP00000015056	98.3539	98.3539
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	21.25	18.75	bos_grunniens	ENSBGRP00000005950	78.4615	69.2308
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	mus_caroli	MGP_CAROLIEiJ_P0079906	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	ictidomys_tridecemlineatus	ENSSTOP00000001197	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	nannospalax_galili	ENSNGAP00000000222	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	65.4167	59.1667	myotis_lucifugus	ENSMLUP00000020969	77.3399	69.9507
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	65	58.75	myotis_lucifugus	ENSMLUP00000020332	76.8473	69.4581
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	79.1667	75	rattus_norvegicus	ENSRNOP00000082773	85.2018	80.7175
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	cervus_hanglu_yarkandensis	ENSCHYP00000008219	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	83.3333	83.3333	nomascus_leucogenys	ENSNLEP00000001621	84.0336	84.0336
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	84.1667	83.3333	peromyscus_maniculatus_bairdii	ENSPEMP00000014006	91.4027	90.4977
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	96.6667	95.4167	peromyscus_maniculatus_bairdii	ENSPEMP00000024152	96.6667	95.4167
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	peromyscus_maniculatus_bairdii	ENSPEMP00000012633	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	carlito_syrichta	ENSTSYP00000004788	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.1667	99.1667	bison_bison_bison	ENSBBBP00000011667	99.1667	99.1667
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	97.5	94.5833	phascolarctos_cinereus	ENSPCIP00000005632	74.7604	72.524
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	99.5833	99.5833	chinchilla_lanigera	ENSCLAP00000016545	99.5833	99.5833
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	48.3333	37.5	caenorhabditis_elegans	W08E3.1.1	72.5	56.25
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	50.8333	45.8333	ciona_intestinalis	ENSCINP00000028023	73.0539	65.8683
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	95	91.25	gadus_morhua	ENSGMOP00000045234	85.7143	82.3308
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	58.3333	55	fundulus_heteroclitus	ENSFHEP00000032693	77.3481	72.9282
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	47.0833	41.6667	ciona_savignyi	ENSCSAVP00000002805	75.8389	67.1141
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	94.5833	91.25	oryzias_javanicus	ENSOJAP00000047727	94.5833	91.25
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	38.3333	26.25	saccharomyces_cerevisiae	YER029C	46.9388	32.1429
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	94.5833	91.25	oryzias_melastigma	ENSOMEP00000022489	94.5833	91.25
ENSDORG00000004527	dipodomys_ordii	ENSDORP00000004237	94.5833	90.8333	cyprinodon_variegatus	ENSCVAP00000011861	94.1909	90.4564

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression