RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSDNVG00000007061 | Gene ID |
112984098 |
Accession |
- |
Symbol |
|
Alias |
- |
Full Name |
5'-3' exoribonuclease 1 |
Status |
Confidence |
Length |
36705 bases |
Strand |
Minus strand |
Position |
PTEY01000242.1 : 315832 - 352536 |
RNA binding domain |
SH3_12 , XRN_N , XRN1_D1 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSDNVP00000011219 |
SH3_12 |
PF18129 |
6.9e-20 |
1 |
ENSDNVP00000011219 |
XRN_N |
PF03159 |
3.6e-92 |
2 |
ENSDNVP00000011219 |
XRN1_D1 |
PF18332 |
6.2e-31 |
3 |
ENSDNVP00000011130 |
SH3_12 |
PF18129 |
7e-20 |
1 |
ENSDNVP00000011130 |
XRN_N |
PF03159 |
3.3e-92 |
2 |
ENSDNVP00000011130 |
XRN1_D1 |
PF18332 |
1.4e-31 |
3 |
ENSDNVP00000011190 |
SH3_12 |
PF18129 |
7.2e-20 |
1 |
ENSDNVP00000011190 |
XRN_N |
PF03159 |
3.5e-92 |
2 |
ENSDNVP00000011190 |
XRN1_D1 |
PF18332 |
6.4e-31 |
3 |
ENSDNVP00000011237 |
XRN_N |
PF03159 |
1.6e-92 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
- |
ENSDNVT00000013411 |
5070 |
1689aa |
ENSDNVP00000011130 |
- |
ENSDNVT00000013485 |
4926 |
1641aa |
ENSDNVP00000011190 |
- |
ENSDNVT00000013522 |
4824 |
1607aa |
ENSDNVP00000011219 |
- |
ENSDNVT00000013546 |
2901 |
966aa |
ENSDNVP00000011237 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSDNVG00000007061 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSDNVG00000007061 | | | | | | | | |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |