RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSDLEG00000002617	Gene ID	111181200	Accession	-
Symbol	U2AF1L4	Alias	-	Full Name	U2 small nuclear RNA auxiliary factor 1 like 4
Status	Confidence	Length	2134 bases	Strand	Plus strand
Position	ML702024.1 : 15509185 - 15511318	RNA binding domain	zf-CCCH , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSDLEP00000003366	zf-CCCH	PF00642	1.3e-13	1
ENSDLEP00000003366	zf-CCCH	PF00642	1.3e-13	2
ENSDLEP00000003369	zf-CCCH	PF00642	1.3e-13	1
ENSDLEP00000003369	zf-CCCH	PF00642	1.3e-13	2
ENSDLEP00000003369	RRM_1	PF00076	6.4e-08	3
ENSDLEP00000003360	zf-CCCH	PF00642	2e-13	1
ENSDLEP00000003360	zf-CCCH	PF00642	2e-13	2
ENSDLEP00000003360	RRM_1	PF00076	2.4e-07	3
ENSDLEP00000003375	RRM_1	PF00076	6.2e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
U2AF1L4-202	ENSDLET00000003806	799	220aa	ENSDLEP00000003360
U2AF1L4-203	ENSDLET00000003812	700	187aa	ENSDLEP00000003366
U2AF1L4-204	ENSDLET00000003815	682	181aa	ENSDLEP00000003369
U2AF1L4-201	ENSDLET00000003821	618	90aa	ENSDLEP00000003375

Gene Model

Click here to download ENSDLEG00000002617's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSDLEG00000002617's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000029432	84.8101	77.6371	delphinapterus_leucas	ENSDLEP00000003360	91.3636	83.6364
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000028599	26.0745	17.192	delphinapterus_leucas	ENSDLEP00000003360	41.3636	27.2727

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	91.3636	89.5455	ornithorhynchus_anatinus	ENSOANP00000054703	64.8387	63.5484
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	50.9091	48.1818	notamacropus_eugenii	ENSMEUP00000014507	66.6667	63.0952
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	54.5455	50	choloepus_hoffmanni	ENSCHOP00000000913	59.7015	54.7264
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	dasypus_novemcinctus	ENSDNOP00000032842	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	63.1818	59.0909	echinops_telfairi	ENSETEP00000003918	63.1818	59.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	87.2727	81.8182	callithrix_jacchus	ENSCJAP00000075947	88.4793	82.9493
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	96.3636	94.0909	cercocebus_atys	ENSCATP00000031446	96.3636	94.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	95.4545	93.1818	macaca_mulatta	ENSMMUP00000029977	97.2222	94.9074
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	90.4545	87.7273	macaca_nemestrina	ENSMNEP00000029073	94.3128	91.4692
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	94.5455	91.8182	papio_anubis	ENSPANP00000012844	95.4128	92.6606
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	95.9091	95	mandrillus_leucophaeus	ENSMLEP00000001176	95.9091	95
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	95.9091	93.1818	gorilla_gorilla	ENSGGOP00000016415	95.9091	93.1818
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	96.3636	95	pan_paniscus	ENSPPAP00000007169	96.3636	95
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	96.3636	94.5455	pan_troglodytes	ENSPTRP00000075776	96.3636	94.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	98.6364	97.7273	pongo_abelii	ENSPPYP00000029480	98.6364	97.7273
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	78.6364	77.2727	homo_sapiens	ENSP00000368258	95.5801	93.9227
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	82.2727	82.2727	canis_lupus_familiaris	ENSCAFP00845001989	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	vulpes_vulpes	ENSVVUP00000020384	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	ursus_americanus	ENSUAMP00000026751	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	ailuropoda_melanoleuca	ENSAMEP00000000633	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	98.1818	97.2727	mustela_putorius_furo	ENSMPUP00000006083	93.913	93.0435
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	87.7273	87.7273	felis_catus	ENSFCAP00000059590	80.4167	80.4167
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	panthera_leo	ENSPLOP00000021407	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	51.3636	48.6364	tursiops_truncatus	ENSTTRP00000003575	71.9745	68.1529
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	panthera_pardus	ENSPPRP00000008053	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	98.6364	dipodomys_ordii	ENSDORP00000022658	99.5455	98.6364
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	physeter_catodon	ENSPCTP00005018640	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	mus_spretus	MGP_SPRETEiJ_P0082020	99.5455	99.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	cricetulus_griseus_chok1gshd	ENSCGRP00001013782	99.5455	99.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	ovis_aries_rambouillet	ENSOARP00020025587	99.5455	99.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	53.1818	48.1818	equus_asinus	ENSEASP00005001600	42.2383	38.2671
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	46.3636	43.6364	marmota_marmota_marmota	ENSMMMP00000006129	85	80
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	89.5455	89.5455	mus_spicilegus	ENSMSIP00000006698	88.3408	88.3408
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	mus_caroli	MGP_CAROLIEiJ_P0078701	99.5455	99.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	80.4545	72.7273	microcebus_murinus	ENSMICP00000009085	93.1579	84.2105
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	bos_taurus	ENSBTAP00000074433	85.214	84.8249
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	89.5455	89.5455	loxodonta_africana	ENSLAFP00000024653	89.5455	89.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	96.3636	95.4545	aotus_nancymaae	ENSANAP00000001464	96.3636	95.4545
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	82.2727	82.2727	balaenoptera_musculus	ENSBMSP00010030518	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	97.2727	95.9091	monodelphis_domestica	ENSMODP00000017514	96.3964	95.045
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	63.1818	59.5455	sorex_araneus	ENSSARP00000001840	62.8959	59.276
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	equus_caballus	ENSECAP00000063313	91.6667	91.6667
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	95	90.4545	saimiri_boliviensis_boliviensis	ENSSBOP00000031591	95	90.4545
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	mus_pahari	MGP_PahariEiJ_P0015578	99.5455	99.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	bos_mutus	ENSBMUP00000023001	85.214	84.8249
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	bison_bison_bison	ENSBBBP00000015321	99.5455	99.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	97.7273	97.2727	jaculus_jaculus	ENSJJAP00000003421	97.7273	97.2727
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	canis_lupus_dingo	ENSCAFP00020023482	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	92.2727	90.4545	phascolarctos_cinereus	ENSPCIP00000020621	66.9967	65.6766
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	89.5455	85.9091	prolemur_simus	ENSPSMP00000000872	88.3408	84.7534
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.0909	99.0909	microtus_ochrogaster	ENSMOCP00000009562	99.0909	99.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	sciurus_vulgaris	ENSSVLP00005013414	99.5455	99.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	55.9091	50	camelus_dromedarius	ENSCDRP00005020616	48.8095	43.6508
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	96.3636	95.4545	vombatus_ursinus	ENSVURP00010030721	52.2167	51.7241
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.0909	98.6364	neovison_vison	ENSNVIP00000021969	80.7407	80.3704
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	34.5455	32.2727	urocitellus_parryii	ENSUPAP00010014913	85.3933	79.7753
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	46.8182	44.0909	catagonus_wagneri	ENSCWAP00000006333	50.9901	48.0198
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	51.8182	43.6364	procavia_capensis	ENSPCAP00000004599	59.6859	50.2618
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	78.6364	76.3636	peromyscus_maniculatus_bairdii	ENSPEMP00000013420	94.5355	91.8033
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	peromyscus_maniculatus_bairdii	ENSPEMP00000008375	99.5455	99.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	cervus_hanglu_yarkandensis	ENSCHYP00000010969	99.5455	99.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	77.7273	75	rhinopithecus_roxellana	ENSRROP00000021544	82.2115	79.3269
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	81.3636	78.6364	rhinopithecus_bieti	ENSRBIP00000039479	89.0547	86.0696
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	88.6364	88.1818	bos_indicus_hybrid	ENSBIXP00005003327	85.5263	85.0877
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	mus_musculus	ENSMUSP00000039406	99.5455	99.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.0909	98.6364	moschus_moschiferus	ENSMMSP00000002580	99.0909	98.6364
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	panthera_tigris_altaica	ENSPTIP00000004584	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	97.2727	95.4545	nomascus_leucogenys	ENSNLEP00000029922	97.2727	95.4545
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	100	100	ursus_maritimus	ENSUMAP00000028075	95.2381	95.2381
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	87.2727	84.5455	rattus_norvegicus	ENSRNOP00000095413	75.5906	73.2283
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	74.0909	70.4545	mesocricetus_auratus	ENSMAUP00000006105	86.2434	82.0106
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	mesocricetus_auratus	ENSMAUP00000018989	99.5455	99.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	sus_scrofa	ENSSSCP00000076063	99.5455	99.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	72.7273	67.2727	ictidomys_tridecemlineatus	ENSSTOP00000000792	86.4865	80
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	37.7273	37.2727	oryctolagus_cuniculus	ENSOCUP00000027743	96.5116	95.3488
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	57.7273	52.2727	carlito_syrichta	ENSTSYP00000014918	72.9885	66.092
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	84.0909	77.7273	propithecus_coquereli	ENSPCOP00000002554	89.372	82.6087
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	83.6364	80.4545	cebus_imitator	ENSCCAP00000017166	90.1961	86.7647
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	monodon_monoceros	ENSMMNP00015000388	100	100
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	bos_grunniens	ENSBGRP00000039290	85.214	84.8249
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.0909	capra_hircus	ENSCHIP00000001010	99.5455	99.0909
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	54.0909	50.4545	chlorocebus_sabaeus	ENSCSAP00000000705	58.6207	54.6798
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	99.5455	99.5455	nannospalax_galili	ENSNGAP00000014441	99.5455	99.5455
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	61.3636	60.4545	nannospalax_galili	ENSNGAP00000006468	84.375	83.125
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	51.3636	47.2727	pteropus_vampyrus	ENSPVAP00000012113	57.6531	53.0612
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	75.9091	61.3636	caenorhabditis_elegans	Y116A8C.35a.2	58.5965	47.3684
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	85	75.4545	drosophila_melanogaster	FBpp0305600	70.8333	62.8788
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	80.4545	73.1818	ciona_intestinalis	ENSCINP00000008425	81.1927	73.8532
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	70.4545	67.2727	eptatretus_burgeri	ENSEBUP00000003662	77.1144	73.6318
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	85.9091	78.1818	eptatretus_burgeri	ENSEBUP00000020473	66.5493	60.5634
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	57.2727	53.1818	chrysemys_picta_bellii	ENSCPBP00000001738	79.7468	74.0506
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	80.4545	72.7273	ciona_savignyi	ENSCSAVP00000000588	83.4906	75.4717
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	94.5455	90.9091	chelonoidis_abingdonii	ENSCABP00000007604	95.4128	91.7431
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	29.5455	27.2727	terrapene_carolina_triunguis	ENSTMTP00000015249	76.4706	70.5882
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	94.0909	91.3636	gopherus_evgoodei	ENSGEVP00005022051	94.0909	91.3636
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	93.1818	87.2727	leptobrachium_leishanense	ENSLLEP00000041897	89.5197	83.8428
ENSDLEG00000002617	delphinapterus_leucas	ENSDLEP00000003360	74.0909	70.9091	pelodiscus_sinensis	ENSPSIP00000004613	84.8958	81.25

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression