RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSDLAG00005017344	Gene ID	692329	Accession	-
Symbol	farsa	Alias	-	Full Name	phenylalanyl-tRNA synthetase subunit alpha
Status	Confidence	Length	16769 bases	Strand	Minus strand
Position	CAJNNU010000022.1 : 4795403 - 4812171	RNA binding domain	PheRS_DBD1 , PheRS_DBD3 , tRNA-synt_2d
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSDLAP00005039549	PheRS_DBD1	PF18552	1.2e-22	1
ENSDLAP00005039549	PheRS_DBD3	PF18553	1.9e-19	2
ENSDLAP00005039549	tRNA-synt_2d	PF01409	3.1e-91	3
ENSDLAP00005039612	PheRS_DBD1	PF18552	1.2e-22	1
ENSDLAP00005039612	PheRS_DBD3	PF18553	1.8e-19	2
ENSDLAP00005039612	tRNA-synt_2d	PF01409	3.1e-91	3
ENSDLAP00005039656	PheRS_DBD1	PF18552	9.6e-22	1
ENSDLAP00005039656	PheRS_DBD3	PF18553	1.9e-19	2
ENSDLAP00005039656	tRNA-synt_2d	PF01409	4.7e-91	3
ENSDLAP00005039661	PheRS_DBD1	PF18552	1.1e-22	1
ENSDLAP00005039661	PheRS_DBD3	PF18553	6.5e-20	2
ENSDLAP00005039661	tRNA-synt_2d	PF01409	6.1e-74	3
ENSDLAP00005039661	tRNA-synt_2d	PF01409	6.1e-74	4
ENSDLAP00005073590	PheRS_DBD1	PF18552	1e-22	1
ENSDLAP00005073590	tRNA-synt_2d	PF01409	2.6e-91	2
ENSDLAP00005079781	PheRS_DBD1	PF18552	1e-22	1
ENSDLAP00005079781	PheRS_DBD3	PF18553	1.9e-19	2
ENSDLAP00005079781	tRNA-synt_2d	PF01409	4.7e-91	3
ENSDLAP00005084108	PheRS_DBD1	PF18552	1.1e-22	1
ENSDLAP00005084108	PheRS_DBD3	PF18553	1.2e-19	2
ENSDLAP00005084108	tRNA-synt_2d	PF01409	2.6e-91	3

Showing 1 to 21 of 21 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
farsa-201	ENSDLAT00005042228	1754	499aa	ENSDLAP00005039549
farsa-202	ENSDLAT00005042344	2599	494aa	ENSDLAP00005039656
farsa-203	ENSDLAT00005081137	2862	497aa	ENSDLAP00005079781
farsa-204	ENSDLAT00005042352	2781	470aa	ENSDLAP00005039661
farsa-205	ENSDLAT00005077865	2766	465aa	ENSDLAP00005084108
farsa-206	ENSDLAT00005074962	2760	463aa	ENSDLAP00005073590
farsa-207	ENSDLAT00005042298	2614	499aa	ENSDLAP00005039612

Showing 1 to 7 of 7 entries

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Gene Model

Click here to download ENSDLAG00005017344's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSDLAG00005017344's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005017586	19.4487	9.49464	dicentrarchus_labrax	ENSDLAP00005039612	25.4509	12.4248
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039387	24.1908	14.6508	dicentrarchus_labrax	ENSDLAP00005039612	28.4569	17.2345

Showing 1 to 2 of 2 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	95.7916	91.984	fundulus_heteroclitus	ENSFHEP00000026499	87.3857	83.9122
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	91.1824	86.7735	poecilia_reticulata	ENSPREP00000020144	96.603	91.9321
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	96.5932	91.1824	xiphophorus_maculatus	ENSXMAP00000008866	96.9819	91.5493
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	96.7936	92.5852	cyclopterus_lumpus	ENSCLMP00005045280	97.1831	92.9577
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	97.3948	93.7876	haplochromis_burtoni	ENSHBUP00000017779	97.7867	94.165
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	97.3948	93.5872	astatotilapia_calliptera	ENSACLP00000002538	97.7867	93.9638
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	95.992	90.1804	oryzias_latipes	ENSORLP00000020543	87.0909	81.8182
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	96.7936	93.1864	oreochromis_niloticus	ENSONIP00000010171	96.7936	93.1864
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	97.5952	95.3908	sparus_aurata	ENSSAUP00010058021	96.4356	94.2574
ENSDLAG00005017344	dicentrarchus_labrax	ENSDLAP00005039612	96.1924	92.986	lates_calcarifer	ENSLCAP00010035139	78.5597	75.9411

Showing 1 to 10 of 200 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression