RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSDCDG00000017851	Gene ID	114769014	Accession	-
Symbol	EIF4G1	Alias	-	Full Name	eukaryotic translation initiation factor 4 gamma 1-like
Status	Confidence	Length	33437 bases	Strand	Minus strand
Position	19 : 1382856 - 1416292	RNA binding domain	W2 , MIF4G , MA3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSDCDP00000031051	W2	PF02020	1.3e-18	1
ENSDCDP00000031051	MIF4G	PF02854	1.2e-66	2
ENSDCDP00000031051	MA3	PF02847	3.3e-26	3
ENSDCDP00000030851	W2	PF02020	1.3e-18	1
ENSDCDP00000030851	MIF4G	PF02854	1.2e-66	2
ENSDCDP00000030851	MA3	PF02847	3.6e-26	3
ENSDCDP00000030637	W2	PF02020	1.3e-18	1
ENSDCDP00000030637	MIF4G	PF02854	6.8e-67	2
ENSDCDP00000030637	MA3	PF02847	3.7e-26	3
ENSDCDP00000030566	W2	PF02020	1.4e-18	1
ENSDCDP00000030566	MIF4G	PF02854	6.9e-67	2
ENSDCDP00000030566	MA3	PF02847	3.9e-26	3
ENSDCDP00000031037	W2	PF02020	1.5e-18	1
ENSDCDP00000031037	MIF4G	PF02854	6.4e-67	2
ENSDCDP00000031037	MA3	PF02847	3.4e-26	3
ENSDCDP00000031652	W2	PF02020	2.5e-18	1
ENSDCDP00000031652	MIF4G	PF02854	3.3e-67	2
ENSDCDP00000031652	MA3	PF02847	1.7e-26	3
ENSDCDP00000031353	W2	PF02020	5.2e-18	1
ENSDCDP00000031353	MIF4G	PF02854	5e-67	2
ENSDCDP00000031353	MA3	PF02847	3.6e-21	3
ENSDCDP00000031134	W2	PF02020	6.1e-18	1
ENSDCDP00000031134	MIF4G	PF02854	1.1e-66	2
ENSDCDP00000031134	MA3	PF02847	3e-26	3
ENSDCDP00000031723	MIF4G	PF02854	1.2e-66	1
ENSDCDP00000031723	MA3	PF02847	3.7e-26	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSDCDT00000039796	5366	1517aa	ENSDCDP00000030566
-	ENSDCDT00000039869	5318	1501aa	ENSDCDP00000030637
-	ENSDCDT00000040097	5207	1464aa	ENSDCDP00000030851
-	ENSDCDT00000040299	5132	1439aa	ENSDCDP00000031037
-	ENSDCDT00000040313	5213	1466aa	ENSDCDP00000031051
-	ENSDCDT00000040401	5063	1416aa	ENSDCDP00000031134
-	ENSDCDT00000040681	4514	1233aa	ENSDCDP00000031353
-	ENSDCDT00000040992	3833	1006aa	ENSDCDP00000031652
-	ENSDCDT00000041064	4371	1456aa	ENSDCDP00000031723

Gene Model

Click here to download ENSDCDG00000017851's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSDCDG00000017851's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000025372	63.1039	54.1063	denticeps_clupeoides	ENSDCDP00000030566	68.886	59.0639
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000027523	80.9417	70.852	denticeps_clupeoides	ENSDCDP00000030566	23.797	20.8306
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000049343	51.8262	41.3098	denticeps_clupeoides	ENSDCDP00000030566	54.2518	43.2432
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000023496	50.7638	40.1293	denticeps_clupeoides	ENSDCDP00000030566	56.9545	45.0231
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000043732	44.3146	27.0988	denticeps_clupeoides	ENSDCDP00000030566	27.4885	16.8095

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	20.8965	14.8319	ciona_intestinalis	ENSCINP00000010668	46.0087	32.656
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	37.5742	30.323	eptatretus_burgeri	ENSEBUP00000018528	45.8568	37.0072
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	65.6559	57.0864	clupea_harengus	ENSCHAP00000012413	66.756	58.0429
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	40.145	35.8603	danio_rerio	ENSDARP00000135501	63.3715	56.6077
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	70.7317	62.1622	carassius_auratus	ENSCARP00000021265	69.585	61.1543
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	41.9908	35.4647	carassius_auratus	ENSCARP00000027433	49.5334	41.8351
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	74.4232	65.9196	astyanax_mexicanus	ENSAMXP00000028710	62.2725	55.1572
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	72.3797	63.2828	ictalurus_punctatus	ENSIPUP00000027916	66.5455	58.1818
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	63.2169	55.4384	electrophorus_electricus	ENSEEEP00000046249	65.017	57.0169
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	3.75742	3.49374	dasypus_novemcinctus	ENSDNOP00000023371	85.0746	79.1045
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	62.6236	56.2953	pygocentrus_nattereri	ENSPNAP00000003570	71.161	63.97
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	66.7106	58.0751	sinocyclocheilus_grahami	ENSSGRP00000001468	38.8335	33.8066
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	60.7119	53.4608	sinocyclocheilus_grahami	ENSSGRP00000041098	74.3942	65.5089
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	73.8958	65.4581	cyprinus_carpio_carpio	ENSCCRP00000106311	65.0232	57.5986
ENSDCDG00000017851	denticeps_clupeoides	ENSDCDP00000030566	72.0501	63.5465	cyprinus_carpio_carpio	ENSCCRP00000130266	69.6178	61.4013

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression