Description

Ensembl ID ENSDARG00000040503 Gene ID 100334443 Accession -
Symbol sb:cb81 Alias cb81 Full Name sb:cb81
Status Confidence Length 8871 bases Strand Minus strand
Position 18 : 49309953 - 49318823 RNA binding domain zf-CCCH , zf-CCCH_2
Summary Predicted to enable metal ion binding activity. Is expressed in several structures, including brain; ectoderm; epiblast; forerunner cell group; and neural tube. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSDARP00000089190 zf-CCCH PF00642 2.7e-22 1
ENSDARP00000089190 zf-CCCH PF00642 2.7e-22 2
ENSDARP00000089190 zf-CCCH_2 PF14608 2.2e-06 3
ENSDARP00000089190 zf-CCCH_2 PF14608 2.2e-06 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSDART00000098419 2447 361aa ENSDARP00000089190

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSDARG00000040503danio_rerioENSDARP0000011384544.50432.7078danio_rerioENSDARP0000008919045.983433.795
ENSDARG00000040503danio_rerioENSDARP0000009237435.423224.1379danio_rerioENSDARP0000008919031.301921.3296
ENSDARG00000040503danio_rerioENSDARP0000012219946.954337.0558danio_rerioENSDARP0000008919051.246540.4432
ENSDARG00000040503danio_rerioENSDARP0000013039055.41440.7643danio_rerioENSDARP0000008919048.199435.4571
ENSDARG00000040503danio_rerioENSDARP0000002520545.721935.5615danio_rerioENSDARP0000008919047.368436.8421
ENSDARG00000040503danio_rerioENSDARP0000001115049.712639.3678danio_rerioENSDARP0000008919047.922437.9501

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSDARG00000040503danio_rerioENSDARP0000008919021.052613.2964caenorhabditis_elegansF52E1.1.128.787918.1818
ENSDARG00000040503danio_rerioENSDARP0000008919016.620512.1884caenorhabditis_elegansY60A9.3.129.556721.6749
ENSDARG00000040503danio_rerioENSDARP0000008919020.498613.2964caenorhabditis_elegansY116A8C.17.136.097623.4146
ENSDARG00000040503danio_rerioENSDARP0000008919018.836613.5734caenorhabditis_elegansF38C2.5.136.559126.3441
ENSDARG00000040503danio_rerioENSDARP0000008919017.728512.4654caenorhabditis_elegansC35D6.4.131.527122.1675
ENSDARG00000040503danio_rerioENSDARP0000008919018.836613.2964caenorhabditis_elegansY116A8C.20.133.830823.8806
ENSDARG00000040503danio_rerioENSDARP0000008919016.897512.1884caenorhabditis_elegansY116A8C.19.131.122422.449
ENSDARG00000040503danio_rerioENSDARP0000008919017.174512.7424caenorhabditis_elegansF38C2.7.130.541922.6601
ENSDARG00000040503danio_rerioENSDARP0000008919018.559612.4654caenorhabditis_elegansY57G11C.25.133.668322.6131
ENSDARG00000040503danio_rerioENSDARP0000008919026.038815.7895caenorhabditis_elegansW02A2.7.120.085512.1795
ENSDARG00000040503danio_rerioENSDARP0000008919025.207815.7895caenorhabditis_elegansAH6.5.119.486112.2056
ENSDARG00000040503danio_rerioENSDARP0000008919027.423817.7285caenorhabditis_elegansC09G9.6.124.324315.7248
ENSDARG00000040503danio_rerioENSDARP0000008919026.038816.3435caenorhabditis_elegansF32A11.6.125.613116.0763
ENSDARG00000040503danio_rerioENSDARP0000008919026.315816.0665caenorhabditis_elegansZC513.6.124.17314.7583
ENSDARG00000040503danio_rerioENSDARP0000008919039.335225.4848caenorhabditis_elegansF38B7.1a.130.869620
ENSDARG00000040503danio_rerioENSDARP0000008919012.46547.20222caenorhabditis_elegansF02E11.4.132.608718.8406
ENSDARG00000040503danio_rerioENSDARP0000008919013.29647.75623caenorhabditis_elegansY110A2AL.1.133.802819.7183
ENSDARG00000040503danio_rerioENSDARP000000891909.695296.37119caenorhabditis_elegansY110A2AL.10.131.531520.7207
ENSDARG00000040503danio_rerioENSDARP0000008919034.90322.1607caenorhabditis_elegansT02E1.3b.118.556711.782
ENSDARG00000040503danio_rerioENSDARP0000008919044.598337.3961callorhinchus_miliiENSCMIP0000003881049.538541.5385
ENSDARG00000040503danio_rerioENSDARP0000008919066.48257.8947latimeria_chalumnaeENSLACP0000001785866.666758.0556
ENSDARG00000040503danio_rerioENSDARP0000008919077.562367.59lepisosteus_oculatusENSLOCP0000001795071.06661.9289
ENSDARG00000040503danio_rerioENSDARP0000008919079.778467.867clupea_harengusENSCHAP0000004698573.282462.341
ENSDARG00000040503danio_rerioENSDARP0000008919081.440471.4681esox_luciusENSELUP0000003445573.564.5
ENSDARG00000040503danio_rerioENSDARP0000008919076.454364.8199haplochromis_burtoniENSHBUP0000000119365.094355.1887
ENSDARG00000040503danio_rerioENSDARP0000008919072.576262.6039ictalurus_punctatusENSIPUP0000001675975.071664.7564
ENSDARG00000040503danio_rerioENSDARP0000008919077.008364.8199oreochromis_niloticusENSONIP0000000158865.876855.4502
ENSDARG00000040503danio_rerioENSDARP0000008919040.166229.9169mus_caroliMGP_CAROLIEiJ_P009146721.229915.8126
ENSDARG00000040503danio_rerioENSDARP0000008919072.576261.4958poecilia_reticulataENSPREP0000002589770.241359.5174
ENSDARG00000040503danio_rerioENSDARP0000008919076.731363.4349cyclopterus_lumpusENSCLMP0000501264466.267954.7847
ENSDARG00000040503danio_rerioENSDARP0000008919039.058230.1939mus_pahariMGP_PahariEiJ_P008909917.735813.7107
ENSDARG00000040503danio_rerioENSDARP0000008919074.792262.6039oryzias_latipesENSORLP0000004283959.340749.6703
ENSDARG00000040503danio_rerioENSDARP0000008919081.994569.8061astyanax_mexicanusENSAMXP0000003407567.579957.5342
ENSDARG00000040503danio_rerioENSDARP0000008919081.440470.9141oncorhynchus_kisutchENSOKIP0000502715273.564
ENSDARG00000040503danio_rerioENSDARP0000008919082.271571.1911oncorhynchus_kisutchENSOKIP0000510813474.2564.25
ENSDARG00000040503danio_rerioENSDARP0000008919086.980681.4404carassius_auratusENSCARP0000009811889.458783.7607
ENSDARG00000040503danio_rerioENSDARP0000008919088.919783.3795carassius_auratusENSCARP0000005623188.919783.3795
ENSDARG00000040503danio_rerioENSDARP0000008919086.426681.1634carassius_auratusENSCARP0000004364488.888983.4758
ENSDARG00000040503danio_rerioENSDARP0000008919040.166229.9169rattus_norvegicusENSRNOP0000004312520.083114.9584
ENSDARG00000040503danio_rerioENSDARP0000008919081.994571.1911oncorhynchus_mykissENSOMYP000000476157464.25
ENSDARG00000040503danio_rerioENSDARP0000008919081.163470.6371oncorhynchus_mykissENSOMYP0000005134073.2563.75
ENSDARG00000040503danio_rerioENSDARP0000008919040.443231.3019mus_musculusENSMUSP0000007163020.137915.5862
ENSDARG00000040503danio_rerioENSDARP0000008919074.238261.2188cyprinodon_variegatusENSCVAP0000002485664.578353.253
ENSDARG00000040503danio_rerioENSDARP0000008919039.889231.0249mus_spretusMGP_SPRETEiJ_P009522320.571416
ENSDARG00000040503danio_rerioENSDARP0000008919073.130261.7729neolamprologus_brichardiENSNBRP0000000798667.005156.599
ENSDARG00000040503danio_rerioENSDARP0000008919072.299261.7729erpetoichthys_calabaricusENSECRP0000000000169.047658.9947
ENSDARG00000040503danio_rerioENSDARP0000008919084.210574.2382electrophorus_electricusENSEEEP0000003434678.756569.4301
ENSDARG00000040503danio_rerioENSDARP0000008919074.792263.1579fundulus_heteroclitusENSFHEP0000003446764.593354.5455
ENSDARG00000040503danio_rerioENSDARP0000008919078.116366.205lates_calcariferENSLCAP0001001944165.887855.8411
ENSDARG00000040503danio_rerioENSDARP0000008919080.886470.3601salmo_truttaENSSTUP000000291487363.5
ENSDARG00000040503danio_rerioENSDARP0000008919082.548571.1911salmo_truttaENSSTUP0000000470574.564.25
ENSDARG00000040503danio_rerioENSDARP0000008919072.299260.6648xiphophorus_maculatusENSXMAP0000000468570.923959.5109
ENSDARG00000040503danio_rerioENSDARP0000008919064.819955.1247poecilia_latipinnaENSPLAP0000002970770.059959.5808
ENSDARG00000040503danio_rerioENSDARP0000008919071.468161.4958gadus_morhuaENSGMOP0000006340961.722553.11
ENSDARG00000040503danio_rerioENSDARP0000008919072.853261.4958takifugu_rubripesENSTRUP0000005129466.080455.7789
ENSDARG00000040503danio_rerioENSDARP0000008919077.285365.374anabas_testudineusENSATEP0000000489965.647155.5294
ENSDARG00000040503danio_rerioENSDARP0000008919072.299261.4958poecilia_formosaENSPFOP0000001381471.117260.4905
ENSDARG00000040503danio_rerioENSDARP0000008919065.09753.7396hippocampus_comesENSHCOP0000000368553.899144.4954
ENSDARG00000040503danio_rerioENSDARP0000008919076.177364.2659sparus_aurataENSSAUP0001000712465.165954.9763
ENSDARG00000040503danio_rerioENSDARP0000008919075.069362.6039nothobranchius_furzeriENSNFUP0001503212566.913655.8025
ENSDARG00000040503danio_rerioENSDARP0000008919077.285365.097amphilophus_citrinellusENSACIP0000001156166.270855.8195
ENSDARG00000040503danio_rerioENSDARP0000008919038.504229.9169mus_spicilegusENSMSIP0000000581824.601819.115
ENSDARG00000040503danio_rerioENSDARP0000008919076.454365.097scophthalmus_maximusENSSMAP0000003866861.883452.6906
ENSDARG00000040503danio_rerioENSDARP0000008919070.914159.5568labrus_bergyltaENSLBEP0000002398162.745152.6961
ENSDARG00000040503danio_rerioENSDARP0000008919073.961268.6981sinocyclocheilus_grahamiENSSGRP0000009377383.699177.743
ENSDARG00000040503danio_rerioENSDARP0000008919081.994577.0083sinocyclocheilus_grahamiENSSGRP0000002887890.519985.0153
ENSDARG00000040503danio_rerioENSDARP0000008919077.562364.5429kryptolebias_marmoratusENSKMAP0000001315767.632956.2802
ENSDARG00000040503danio_rerioENSDARP0000008919081.717572.0222hucho_huchoENSHHUP0000005573973.7565
ENSDARG00000040503danio_rerioENSDARP0000008919081.440470.6371hucho_huchoENSHHUP0000000641373.563.75
ENSDARG00000040503danio_rerioENSDARP0000008919075.623363.7119myripristis_murdjanENSMMDP0000500988165.783155.4217
ENSDARG00000040503danio_rerioENSDARP0000008919070.637160.9418sander_luciopercaENSSLUP0000001097261.743353.2688
ENSDARG00000040503danio_rerioENSDARP0000008919055.401746.2604tetraodon_nigroviridisENSTNIP0000002306765.573854.7541
ENSDARG00000040503danio_rerioENSDARP0000008919068.14457.8947acanthochromis_polyacanthusENSAPOP0000000898969.491559.0395
ENSDARG00000040503danio_rerioENSDARP0000008919075.623363.9889cottoperca_gobioENSCGOP0000001925264.845654.8694
ENSDARG00000040503danio_rerioENSDARP0000008919060.110851.2465gasterosteus_aculeatusENSGACP0000001770865.558955.8912
ENSDARG00000040503danio_rerioENSDARP0000008919078.393366.205larimichthys_croceaENSLCRP0000501987365.81455.5814
ENSDARG00000040503danio_rerioENSDARP0000008919073.961262.0499pundamilia_nyerereiENSPNYP0000000988466.7556
ENSDARG00000040503danio_rerioENSDARP0000008919074.515262.8809amphiprion_ocellarisENSAOCP0000001895071.542660.3723
ENSDARG00000040503danio_rerioENSDARP0000008919076.731364.8199astatotilapia_callipteraENSACLP0000002023965.795755.5819
ENSDARG00000040503danio_rerioENSDARP0000008919075.346361.7729cynoglossus_semilaevisENSCSEP0000002264753.754944.0711
ENSDARG00000040503danio_rerioENSDARP0000008919072.853261.4958oryzias_javanicusENSOJAP0000004873670.509459.5174
ENSDARG00000040503danio_rerioENSDARP0000008919082.271571.4681oncorhynchus_tshawytschaENSOTSP0000507645974.2564.5
ENSDARG00000040503danio_rerioENSDARP0000008919081.163470.3601oncorhynchus_tshawytschaENSOTSP0000500671673.2563.5
ENSDARG00000040503danio_rerioENSDARP0000008919077.839365.928seriola_dumeriliENSSDUP0000000600564.746554.8387
ENSDARG00000040503danio_rerioENSDARP0000008919074.792262.8809scleropages_formosusENSSFOP0001505568169.587658.5052
ENSDARG00000040503danio_rerioENSDARP0000008919078.670466.482dicentrarchus_labraxENSDLAP0000502678565.893355.6845
ENSDARG00000040503danio_rerioENSDARP0000008919076.731364.8199maylandia_zebraENSMZEP0000502131666.267955.9809
ENSDARG00000040503danio_rerioENSDARP0000008919076.454364.5429maylandia_zebraENSMZEP0000503309365.871155.6086
ENSDARG00000040503danio_rerioENSDARP0000008919075.900363.9889mastacembelus_armatusENSMAMP0000002986557.805948.7342
ENSDARG00000040503danio_rerioENSDARP0000008919073.130262.0499oryzias_melastigmaENSOMEP0000001881470.212859.5745
ENSDARG00000040503danio_rerioENSDARP0000008919082.825572.5762pygocentrus_nattereriENSPNAP0000002266278.891869.1293
ENSDARG00000040503danio_rerioENSDARP0000008919075.900364.2659stegastes_partitusENSSPAP0000001792769.017658.4383
ENSDARG00000040503danio_rerioENSDARP0000008919073.961262.0499oryzias_sinensisENSOSIP0000001830758.810649.3392
ENSDARG00000040503danio_rerioENSDARP0000008919080.332470.0831salmo_salarENSSSAP0000004243172.563.25
ENSDARG00000040503danio_rerioENSDARP0000008919082.548571.1911salmo_salarENSSSAP0000001134574.564.25
ENSDARG00000040503danio_rerioENSDARP0000008919073.407264.5429denticeps_clupeoidesENSDCDP0000006026474.022365.0838
ENSDARG00000040503danio_rerioENSDARP0000008919073.407261.4958betta_splendensENSBSLP0000002074268.29957.2165
ENSDARG00000040503danio_rerioENSDARP0000008919074.792263.1579amphiprion_perculaENSAPEP0000003157271.808560.6383
ENSDARG00000040503danio_rerioENSDARP0000008919077.839365.928seriola_lalandi_dorsalisENSSLDP0000002308865.197255.2204
ENSDARG00000040503danio_rerioENSDARP0000008919090.304784.4875cyprinus_carpio_carpioENSCCRP0000003431189.807284.022
ENSDARG00000040503danio_rerioENSDARP0000008919089.750783.6565cyprinus_carpio_carpioENSCCRP0000013929391.011284.8315

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003729enables mRNA binding1IEADanio_rerio(7955)Function
GO:0046872enables metal ion binding1IEADanio_rerio(7955)Function

Expression