RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSDARG00000022968	Gene ID	327220	Accession	-
Symbol	fxr1	Alias	zgc:66226;wu:fb16f11;wu:fd18c10	Full Name	FMR1 autosomal homolog 1
Status	Confidence	Length	22670 bases	Strand	Minus strand
Position	22 : 37542741 - 37565410	RNA binding domain	Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary	Predicted to enable mRNA 3'-UTR binding activity; protein homodimerization activity; and translation regulator activity. Acts upstream of or within several processes, including muscle cell development; skeletal muscle tissue development; and somitogenesis. Predicted to be located in cytoplasm. Predicted to be part of polysome. Predicted to be active in several cellular components, including dendrite; growth cone; and postsynaptic density. Is expressed in several structures, including adaxial cell; heart; musculature system; neurons; and skeletal muscle myoblast. Orthologous to human FXR1 (FMR1 autosomal homolog 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
ENSDARP00000095251	Agenet	PF05641	3.7e-14	1
ENSDARP00000095251	KH_9	PF17904	5e-32	2
ENSDARP00000095251	KH_1	PF00013	1.1e-17	3
ENSDARP00000095251	KH_1	PF00013	1.1e-17	4
ENSDARP00000095251	FXMRP1_C_core	PF12235	2.8e-51	5
ENSDARP00000095251	FXR_C1	PF16096	3.1e-38	6
ENSDARP00000124192	Agenet	PF05641	5e-14	1
ENSDARP00000124192	KH_9	PF17904	5.3e-32	2
ENSDARP00000124192	KH_1	PF00013	1.2e-17	3
ENSDARP00000124192	KH_1	PF00013	1.2e-17	4
ENSDARP00000124192	FXMRP1_C_core	PF12235	2.9e-51	5
ENSDARP00000124192	FXR_C1	PF16096	6.3e-38	6

Showing 1 to 12 of 12 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
fxr1-201	ENSDART00000104478	2737	622aa	ENSDARP00000095251
fxr1-202	ENSDART00000148474	669	No protein	-
fxr1-203	ENSDART00000149482	2753	645aa	ENSDARP00000124192

Showing 1 to 3 of 3 entries

Gene Model

Click here to download ENSDARG00000022968's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSDARG00000022968's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000022968	danio_rerio	ENSDARP00000104665	73.2865	56.942	danio_rerio	ENSDARP00000124192	64.6512	50.2326
ENSDARG00000022968	danio_rerio	ENSDARP00000004667	71.3018	60.355	danio_rerio	ENSDARP00000124192	74.7287	63.2558

Showing 1 to 2 of 2 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	56.2791	39.2248	drosophila_melanogaster	FBpp0300445	49.7942	34.7051
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	46.9767	31.938	ciona_intestinalis	ENSCINP00000017388	64.7436	44.0171
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	83.5659	73.0233	callorhinchus_milii	ENSCMIP00000032834	78.8012	68.8596
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	86.8217	75.969	latimeria_chalumnae	ENSLACP00000012821	82.4742	72.1649
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	88.2171	77.5194	lepisosteus_oculatus	ENSLOCP00000000652	83.3089	73.2064
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	89.4574	80	clupea_harengus	ENSCHAP00000043182	79.5862	71.1724
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	79.6899	69.3023	erinaceus_europaeus	ENSEEUP00000006255	82.7697	71.9807
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	54.2636	48.2171	choloepus_hoffmanni	ENSCHOP00000011407	75.1073	66.7382
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	83.2558	72.2481	anas_platyrhynchos_platyrhynchos	ENSAPLP00000028519	82.6154	71.6923
ENSDARG00000022968	danio_rerio	ENSDARP00000124192	67.1318	59.2248	sphenodon_punctatus	ENSSPUP00000018836	81.5443	71.9397

Showing 1 to 10 of 222 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000381	involved_in regulation of alternative mRNA splicing, via spliceosome	1	IBA	Danio_rerio(7955)	Process
GO:0001756	acts_upstream_of_or_within somitogenesis	1	IMP	Danio_rerio(7955)	Process
GO:0001934	involved_in positive regulation of protein phosphorylation	1	IBA	Danio_rerio(7955)	Process
GO:0003676	enables nucleic acid binding	1	IEA	Danio_rerio(7955)	Function
GO:0003723	enables RNA binding	1	IEA	Danio_rerio(7955)	Function
GO:0003729	enables mRNA binding	1	IEA	Danio_rerio(7955)	Function
GO:0003730	enables mRNA 3-UTR binding	1	IBA	Danio_rerio(7955)	Function
GO:0005634	is_active_in nucleus	1	IBA	Danio_rerio(7955)	Component
GO:0005737	located_in cytoplasm	1	IEA	Danio_rerio(7955)	Component
GO:0005844	part_of polysome	1	IBA	Danio_rerio(7955)	Component

Showing 1 to 10 of 31 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs
Gene Ontology