RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSDARG00000021443	Gene ID	323671	Accession	-
Symbol	zfp36l1b	Alias	fc06f10;zfp36l1l;zgc:77882;wu:fc06f10	Full Name	zinc finger protein 36, C3H type-like 1b
Status	Confidence	Length	5073 bases	Strand	Minus strand
Position	20 : 9575374 - 9580446	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including epidermis; nervous system; neural crest; neural plate; and ventral mesoderm. Orthologous to human ZFP36L1 (ZFP36 ring finger protein like 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
ENSDARP00000011150	zf-CCCH	PF00642	8.2e-22	1
ENSDARP00000011150	zf-CCCH	PF00642	8.2e-22	2
ENSDARP00000011150	zf-CCCH_2	PF14608	2.3e-05	3
ENSDARP00000011150	zf-CCCH_2	PF14608	2.3e-05	4

Showing 1 to 4 of 4 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
zfp36l1b-201	ENSDART00000014168	3021	348aa	ENSDARP00000011150

Showing 1 to 1 of 1 entries

Gene Model

Click here to download ENSDARG00000021443's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSDARG00000021443's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000021443	danio_rerio	ENSDARP00000113845	54.1555	43.9678	danio_rerio	ENSDARP00000011150	58.046	47.1264
ENSDARG00000021443	danio_rerio	ENSDARP00000092374	35.1097	24.1379	danio_rerio	ENSDARP00000011150	32.1839	22.1264
ENSDARG00000021443	danio_rerio	ENSDARP00000025205	74.0642	66.0428	danio_rerio	ENSDARP00000011150	79.5977	70.977
ENSDARG00000021443	danio_rerio	ENSDARP00000122199	40.3553	31.2183	danio_rerio	ENSDARP00000011150	45.6897	35.3448
ENSDARG00000021443	danio_rerio	ENSDARP00000089190	47.9224	37.9501	danio_rerio	ENSDARP00000011150	49.7126	39.3678
ENSDARG00000021443	danio_rerio	ENSDARP00000130390	45.5414	35.3503	danio_rerio	ENSDARP00000011150	41.092	31.8966

Showing 1 to 6 of 6 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	24.4253	15.8046	caenorhabditis_elegans	F52E1.1.1	32.197	20.8333
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	20.1149	13.5057	caenorhabditis_elegans	Y60A9.3.1	34.4828	23.1527
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	21.8391	15.2299	caenorhabditis_elegans	Y116A8C.17.1	37.0732	25.8537
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	21.8391	15.5172	caenorhabditis_elegans	F38C2.5.1	40.8602	29.0323
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	19.5402	13.2184	caenorhabditis_elegans	C35D6.4.1	33.4975	22.6601
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	21.8391	14.9425	caenorhabditis_elegans	Y116A8C.20.1	37.8109	25.8706
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	20.1149	14.0805	caenorhabditis_elegans	Y116A8C.19.1	35.7143	25
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	20.1149	13.2184	caenorhabditis_elegans	F38C2.7.1	34.4828	22.6601
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	21.2644	13.2184	caenorhabditis_elegans	Y57G11C.25.1	37.1859	23.1156
ENSDARG00000021443	danio_rerio	ENSDARP00000011150	26.1494	15.8046	caenorhabditis_elegans	W02A2.7.1	19.4444	11.7521

Showing 1 to 10 of 178 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003729	enables mRNA binding	1	IEA	Danio_rerio(7955)	Function
GO:0005634	located_in nucleus	1	IEA	Danio_rerio(7955)	Component
GO:0005737	located_in cytoplasm	1	IEA	Danio_rerio(7955)	Component
GO:0046872	enables metal ion binding	1	IEA	Danio_rerio(7955)	Function

Showing 1 to 4 of 4 entries

Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs
Gene Ontology