RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSDARG00000018460	Gene ID	560384	Accession	-
Symbol	mbnl2	Alias	fj89c04;wu:fj89c04	Full Name	muscleblind-like splicing regulator 2
Status	Confidence	Length	116321 bases	Strand	Plus strand
Position	1 : 2101541 - 2217861	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	Predicted to enable RNA binding activity. Acts upstream of or within animal organ development; chordate embryonic development; and muscle cell development. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in several structures, including chordo neural hinge; gonad; nervous system; pectoral fin bud; and solid lens vesicle. Used to study myotonic disease. Orthologous to human MBNL2 (muscleblind like splicing regulator 2). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSDARP00000023425	zf-CCCH	PF00642	5.2e-12	1
ENSDARP00000023425	zf-CCCH	PF00642	5.2e-12	2
ENSDARP00000023425	zf-CCCH_2	PF14608	3.4e-08	3
ENSDARP00000023425	zf-CCCH_2	PF14608	3.4e-08	4
ENSDARP00000023425	zf-CCCH_2	PF14608	3.4e-08	5
ENSDARP00000023425	zf-CCCH_2	PF14608	3.4e-08	6
ENSDARP00000069409	zf-CCCH	PF00642	6.8e-12	1
ENSDARP00000069409	zf-CCCH	PF00642	6.8e-12	2
ENSDARP00000069409	zf-CCCH_2	PF14608	4.4e-08	3
ENSDARP00000069409	zf-CCCH_2	PF14608	4.4e-08	4
ENSDARP00000069409	zf-CCCH_2	PF14608	4.4e-08	5
ENSDARP00000069409	zf-CCCH_2	PF14608	4.4e-08	6
ENSDARP00000088832	zf-CCCH	PF00642	5.3e-05	1
ENSDARP00000106259	zf-CCCH	PF00642	8.3e-12	1
ENSDARP00000106259	zf-CCCH	PF00642	8.3e-12	2
ENSDARP00000106259	zf-CCCH_2	PF14608	5.4e-08	3
ENSDARP00000106259	zf-CCCH_2	PF14608	5.4e-08	4
ENSDARP00000106259	zf-CCCH_2	PF14608	5.4e-08	5
ENSDARP00000106259	zf-CCCH_2	PF14608	5.4e-08	6
ENSDARP00000106857	zf-CCCH	PF00642	6.4e-05	1
ENSDARP00000107016	zf-CCCH	PF00642	8.3e-12	1
ENSDARP00000107016	zf-CCCH	PF00642	8.3e-12	2
ENSDARP00000107016	zf-CCCH_2	PF14608	5.4e-08	3
ENSDARP00000107016	zf-CCCH_2	PF14608	5.4e-08	4
ENSDARP00000107016	zf-CCCH_2	PF14608	5.4e-08	5
ENSDARP00000107016	zf-CCCH_2	PF14608	5.4e-08	6
ENSDARP00000137523	zf-CCCH	PF00642	5.2e-12	1
ENSDARP00000137523	zf-CCCH	PF00642	5.2e-12	2
ENSDARP00000137523	zf-CCCH_2	PF14608	3.4e-08	3
ENSDARP00000137523	zf-CCCH_2	PF14608	3.4e-08	4
ENSDARP00000137523	zf-CCCH_2	PF14608	3.4e-08	5
ENSDARP00000137523	zf-CCCH_2	PF14608	3.4e-08	6
ENSDARP00000138731	zf-CCCH	PF00642	5.3e-05	1

Showing 1 to 33 of 33 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
mbnl2-201	ENSDART00000022019	1630	339aa	ENSDARP00000023425
mbnl2-202	ENSDART00000074923	1400	357aa	ENSDARP00000069409
mbnl2-203	ENSDART00000098059	1237	208aa	ENSDARP00000088832
mbnl2-204	ENSDART00000122626	4028	371aa	ENSDARP00000107016
mbnl2-205	ENSDART00000124534	5065	371aa	ENSDARP00000106259
mbnl2-206	ENSDART00000128187	919	58aa	ENSDARP00000106857
mbnl2-207	ENSDART00000131714	734	8aa	ENSDARP00000119516
mbnl2-208	ENSDART00000132126	715	169aa	ENSDARP00000112842
mbnl2-209	ENSDART00000136680	720	No protein	-
mbnl2-210	ENSDART00000138396	643	8aa	ENSDARP00000120967

Showing 1 to 10 of 14 entries

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Gene Model

Click here to download ENSDARG00000018460's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSDARG00000018460's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000018460	danio_rerio	ENSDARP00000101753	75.5155	62.8866	danio_rerio	ENSDARP00000106259	78.9757	65.7682
ENSDARG00000018460	danio_rerio	ENSDARP00000088834	71.934	61.5566	danio_rerio	ENSDARP00000106259	82.2102	70.3504
ENSDARG00000018460	danio_rerio	ENSDARP00000041548	26.6174	17.1904	danio_rerio	ENSDARP00000106259	38.814	25.0674

Showing 1 to 3 of 3 entries

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Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	31.8059	23.4501	caenorhabditis_elegans	K02H8.1d.1	31.5508	23.262
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	61.186	47.1698	drosophila_melanogaster	FBpp0307871	23.7448	18.3054
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	17.7898	13.2075	ciona_intestinalis	ENSCINP00000031298	58.9286	43.75
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	42.3181	30.1887	ciona_intestinalis	ENSCINP00000025100	38.3863	27.3839
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	59.8383	49.3261	petromyzon_marinus	ENSPMAP00000006342	68.3077	56.3077
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	42.0485	33.9623	petromyzon_marinus	ENSPMAP00000010529	66.383	53.617
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	60.6469	49.8652	eptatretus_burgeri	ENSEBUP00000005682	66.1765	54.4118
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	66.5768	50.4043	eptatretus_burgeri	ENSEBUP00000027304	62.6904	47.4619
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	70.8895	54.1779	eptatretus_burgeri	ENSEBUP00000011496	50.3831	38.5057
ENSDARG00000018460	danio_rerio	ENSDARP00000106259	67.655	53.0997	eptatretus_burgeri	ENSEBUP00000021106	60.628	47.5845

Showing 1 to 10 of 208 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0001654	acts_upstream_of_or_within eye development	1	IMP	Danio_rerio(7955)	Process
GO:0003723	enables RNA binding	1	IBA	Danio_rerio(7955)	Function
GO:0005634	is_active_in nucleus	1	IBA	Danio_rerio(7955)	Component
GO:0007507	acts_upstream_of_or_within heart development	1	IMP	Danio_rerio(7955)	Process
GO:0007517	acts_upstream_of_or_within muscle organ development	1	IMP	Danio_rerio(7955)	Process
GO:0043009	acts_upstream_of_or_within chordate embryonic development	1	IMP	Danio_rerio(7955)	Process
GO:0043484	involved_in regulation of RNA splicing	1	IBA	Danio_rerio(7955)	Process
GO:0046872	enables metal ion binding	1	IEA	Danio_rerio(7955)	Function
GO:0055001	acts_upstream_of_or_within muscle cell development	1	IMP	Danio_rerio(7955)	Process

Showing 1 to 9 of 9 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression