RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSDARG00000016177	Gene ID	541411	Accession	-
Symbol	eif4enif1	Alias	fd15a05;wu:fd15a05;zgc:101646	Full Name	eukaryotic translation initiation factor 4E nuclear import factor 1
Status	Confidence	Length	25100 bases	Strand	Plus strand
Position	6 : 40922572 - 40947671	RNA binding domain	EIF4E-T
Summary	Predicted to enable mRNA binding activity. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within translational initiation. Part of protein-containing complex. Orthologous to human EIF4ENIF1 (eukaryotic translation initiation factor 4E nuclear import factor 1). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSDARP00000113326	EIF4E-T	PF10477	2e-114	1
ENSDARP00000113326	EIF4E-T	PF10477	2e-114	2
ENSDARP00000023717	EIF4E-T	PF10477	2.1e-73	1
ENSDARP00000023717	EIF4E-T	PF10477	2.1e-73	2
ENSDARP00000115956	EIF4E-T	PF10477	2.1e-73	1
ENSDARP00000115956	EIF4E-T	PF10477	2.1e-73	2
ENSDARP00000152551	EIF4E-T	PF10477	1.7e-25	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
eif4enif1-202	ENSDART00000133599	4183	944aa	ENSDARP00000113326
eif4enif1-203	ENSDART00000145153	3492	747aa	ENSDARP00000115956
eif4enif1-201	ENSDART00000002728	3459	747aa	ENSDARP00000023717
eif4enif1-204	ENSDART00000188975	633	210aa	ENSDARP00000152551

Gene Model

Click here to download ENSDARG00000016177's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSDARG00000016177's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000016177

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000016177	danio_rerio	ENSDARP00000113326	33.8983	19.4915	caenorhabditis_elegans	F56F3.1.1	42.0499	24.1787
ENSDARG00000016177	danio_rerio	ENSDARP00000113326	65.9958	62.1822	cyprinus_carpio_carpio	ENSCCRP00000102214	82.626	77.8515

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003729	enables mRNA binding	1	IBA	Danio_rerio(7955)	Function
GO:0003743	enables translation initiation factor activity	1	IEA	Danio_rerio(7955)	Function
GO:0005515	enables protein binding	1	IPI	Danio_rerio(7955)	Function
GO:0005634	is_active_in nucleus	1	IBA	Danio_rerio(7955)	Component
GO:0005737	is_active_in cytoplasm	2	IBA,IEA	Danio_rerio(7955)	Component
GO:0006412	acts_upstream_of_or_within translation	1	IEA	Danio_rerio(7955)	Process
GO:0006413	acts_upstream_of_or_within translational initiation	1	IEA	Danio_rerio(7955)	Process
GO:0017148	involved_in negative regulation of translation	1	IBA	Danio_rerio(7955)	Process
GO:0032991	part_of protein-containing complex	1	IPI	Danio_rerio(7955)	Component

Expression