RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSDARG00000015128	Gene ID	325618	Accession	-
Symbol	rpl27	Alias	fc93a08;zgc:56171;wu:fc93a08	Full Name	ribosomal protein L27
Status	Confidence	Length	5265 bases	Strand	Minus strand
Position	3 : 29893966 - 29899230	RNA binding domain	Ribosomal_L27e , KOW
Summary	Predicted to be a structural constituent of ribosome. Acts upstream of or within erythrocyte differentiation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 16. Orthologous to human RPL27 (ribosomal protein L27). [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

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Protein	Domain	Pfam ID	E-value	Domain number
ENSDARP00000018737	KOW	PF00467	3.6e-07	1
ENSDARP00000018737	Ribosomal_L27e	PF01777	1.3e-38	2
ENSDARP00000117864	KOW	PF00467	3.6e-07	1
ENSDARP00000117864	Ribosomal_L27e	PF01777	1.3e-38	2

Showing 1 to 4 of 4 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
rpl27-201	ENSDART00000020311	487	136aa	ENSDARP00000018737
rpl27-202	ENSDART00000140518	682	136aa	ENSDARP00000117864

Showing 1 to 2 of 2 entries

Gene Model

Click here to download ENSDARG00000015128's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSDARG00000015128's PPI file

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	80.8824	68.3824	caenorhabditis_elegans	C53H9.1.1	80.8824	68.3824
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	77.2059	62.5	drosophila_melanogaster	FBpp0303780	77.7778	62.963
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	85.2941	77.2059	ciona_intestinalis	ENSCINP00000028064	85.2941	77.2059
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	97.7941	93.3824	petromyzon_marinus	ENSPMAP00000006810	97.7941	93.3824
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	93.3824	83.0882	eptatretus_burgeri	ENSEBUP00000001803	63.8191	56.7839
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	98.5294	94.8529	callorhinchus_milii	ENSCMIP00000010934	72.4324	69.7297
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	97.0588	92.6471	latimeria_chalumnae	ENSLACP00000007044	79.5181	75.9036
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	98.5294	94.1176	latimeria_chalumnae	ENSLACP00000008825	98.5294	94.1176
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	99.2647	95.5882	lepisosteus_oculatus	ENSLOCP00000015056	99.2647	95.5882
ENSDARG00000015128	danio_rerio	ENSDARP00000018737	99.2647	97.7941	clupea_harengus	ENSCHAP00000001480	99.2647	97.7941

Showing 1 to 10 of 371 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003735	enables structural constituent of ribosome	2	IBA,IEA	Danio_rerio(7955)	Function
GO:0005737	located_in cytoplasm	1	IEA	Danio_rerio(7955)	Component
GO:0005783	located_in endoplasmic reticulum	1	IEA	Danio_rerio(7955)	Component
GO:0005840	located_in ribosome	1	IEA	Danio_rerio(7955)	Component
GO:0006412	acts_upstream_of_or_within translation	1	IEA	Danio_rerio(7955)	Process
GO:0015934	part_of large ribosomal subunit	1	ISS	Danio_rerio(7955)	Component
GO:0022625	part_of cytosolic large ribosomal subunit	1	IBA	Danio_rerio(7955)	Component
GO:0030218	acts_upstream_of_or_within erythrocyte differentiation	1	IMP	Danio_rerio(7955)	Process
GO:0098556	located_in cytoplasmic side of rough endoplasmic reticulum membrane	1	ISS	Danio_rerio(7955)	Component

Showing 1 to 9 of 9 entries

Contents

Description
RBDs
Transcripts
Gene Model
PPI
Orthologs
Gene Ontology