RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCVAG00000012483	Gene ID	107088140	Accession	-
Symbol		Alias	-	Full Name	ataxin-1-like
Status	Confidence	Length	20397 bases	Strand	Minus strand
Position	KL652708.1 : 842170 - 862566	RNA binding domain	AXH
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCVAP00000010372	AXH	PF08517	6.1e-33	1
ENSCVAP00000010376	AXH	PF08517	6.1e-33	1
ENSCVAP00000026722	AXH	PF08517	6.1e-33	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCVAT00000017055	4976	667aa	ENSCVAP00000026722
-	ENSCVAT00000017059	4565	667aa	ENSCVAP00000010376
-	ENSCVAT00000017048	4709	667aa	ENSCVAP00000010372

Gene Model

Click here to download ENSCVAG00000012483's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCVAG00000012483's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000009051	26.2967	14.7165	cyprinodon_variegatus	ENSCVAP00000026722	32.6837	18.2909
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000032869	29.3893	18.8295	cyprinodon_variegatus	ENSCVAP00000026722	34.6327	22.1889
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000004117	25.894	16.3995	cyprinodon_variegatus	ENSCVAP00000026722	31.4843	19.94

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	89.3553	83.6582	poecilia_reticulata	ENSPREP00000011619	88.2963	82.6667
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	90.1049	84.4078	xiphophorus_maculatus	ENSXMAP00000027127	89.037	83.4074
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	91.0045	85.4573	fundulus_heteroclitus	ENSFHEP00000002448	89.3962	83.947
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	77.961	68.066	oryzias_latipes	ENSORLP00000037320	76.4706	66.7647
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	78.7106	70.7646	cyclopterus_lumpus	ENSCLMP00005036276	77.2059	69.4118
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	81.4093	73.3133	oreochromis_niloticus	ENSONIP00000050972	80.5638	72.5519
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	81.8591	73.7631	sparus_aurata	ENSSAUP00010033912	79.0159	71.2012
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	81.1094	72.8636	haplochromis_burtoni	ENSHBUP00000006186	80.1481	72
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	82.4588	74.5127	lates_calcarifer	ENSLCAP00010041771	79.5948	71.9247
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	64.1679	60.4198	poecilia_latipinna	ENSPLAP00000016066	88.6128	83.4369
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	89.8051	83.6582	poecilia_formosa	ENSPFOP00000009510	88.7407	82.6667
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	73.6132	66.5667	seriola_dumerili	ENSSDUP00000031694	80.4918	72.7869
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	85.0075	77.2114	acanthochromis_polyacanthus	ENSAPOP00000008097	82.7737	75.1825
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	81.7091	72.5637	anabas_testudineus	ENSATEP00000022707	79.2151	70.3488
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	83.0585	75.7121	dicentrarchus_labrax	ENSDLAP00005007704	79.03	72.0399
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	78.2609	68.5157	scophthalmus_maximus	ENSSMAP00000050244	77.4481	67.8042
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	77.2114	68.2159	oryzias_melastigma	ENSOMEP00000006405	75.8468	67.0103
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	84.8576	77.6612	stegastes_partitus	ENSSPAP00000025106	82.029	75.0725
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	82.009	74.8126	larimichthys_crocea	ENSLCRP00005003371	78.3668	71.49
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	72.1139	61.0195	hippocampus_comes	ENSHCOP00000027146	74.114	62.7119
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	74.6627	64.9175	takifugu_rubripes	ENSTRUP00000069734	73.997	64.3388
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	74.9625	65.8171	cynoglossus_semilaevis	ENSCSEP00000032176	74.0741	65.037
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	85.0075	76.7616	amphiprion_percula	ENSAPEP00000019566	82.8947	74.8538
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	60.8696	54.4228	labrus_bergylta	ENSLBEP00000009953	78.3784	70.0772
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	81.1094	72.8636	maylandia_zebra	ENSMZEP00005034766	80.1481	72
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	72.8636	63.2684	betta_splendens	ENSBSLP00000020745	73.525	63.8427
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	85.1574	77.2114	amphiprion_ocellaris	ENSAOCP00000021776	82.9197	75.1825
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	71.0645	63.1184	oryzias_javanicus	ENSOJAP00000024738	69.8085	62.0029
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	77.3613	67.916	oryzias_sinensis	ENSOSIP00000010933	75.9941	66.7158
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	30.5847	28.036	gasterosteus_aculeatus	ENSGACP00000019942	78.1609	71.6475
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	81.2594	72.2639	mastacembelus_armatus	ENSMAMP00000035921	79.4721	70.6745
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	80.9595	72.1139	nothobranchius_furzeri	ENSNFUP00015030348	79.5287	70.8395
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	83.2084	76.3118	kryptolebias_marmoratus	ENSKMAP00000017788	82.3442	75.5193
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	81.4093	73.4633	sander_lucioperca	ENSSLUP00000006810	79.5022	71.7423
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	64.6177	57.7211	cottoperca_gobio	ENSCGOP00000032730	79.8148	71.2963
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	82.3088	74.5127	seriola_lalandi_dorsalis	ENSSLDP00000015738	80.2632	72.6608
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	17.8411	9.89505	caenorhabditis_elegans	K04F10.1.1	39.7993	22.0736
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	13.3433	9.74513	drosophila_melanogaster	FBpp0289092	38.6957	28.2609
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	11.3943	7.1964	ciona_intestinalis	ENSCINP00000029476	50.3311	31.7881
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	18.8906	12.2939	eptatretus_burgeri	ENSEBUP00000018963	26.8657	17.484
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	43.7781	31.7841	lepisosteus_oculatus	ENSLOCP00000004224	50.6066	36.7418
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	54.2729	45.2774	clupea_harengus	ENSCHAP00000050454	54.1106	45.142
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	51.8741	40.1799	carassius_auratus	ENSCARP00000061912	60.0694	46.5278
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	53.3733	43.6282	astyanax_mexicanus	ENSAMXP00000002788	59.0381	48.2587
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	49.7751	39.4303	ictalurus_punctatus	ENSIPUP00000021573	52.6984	41.746
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	47.3763	39.1304	electrophorus_electricus	ENSEEEP00000007926	54.2955	44.8454
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	63.1184	52.3238	esox_lucius	ENSELUP00000064295	62.9297	52.1674
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	66.4168	54.5727	oncorhynchus_kisutch	ENSOKIP00005017005	65.3392	53.6873
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	62.5187	52.9235	oncorhynchus_kisutch	ENSOKIP00005033258	62.8012	53.1627
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	62.8186	53.2234	oncorhynchus_mykiss	ENSOMYP00000105203	63.1024	53.4639
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	66.4168	55.0225	oncorhynchus_mykiss	ENSOMYP00000083120	65.1471	53.9706
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	67.916	56.6717	salmo_salar	ENSSSAP00000028943	65.368	54.5455
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	49.6252	41.8291	salmo_salar	ENSSSAP00000167693	64.2718	54.1748
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	63.8681	53.2234	salmo_trutta	ENSSTUP00000114057	64.3505	53.6254
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	67.7661	56.5217	salmo_trutta	ENSSTUP00000055191	65.1297	54.3228
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	72.1139	61.1694	gadus_morhua	ENSGMOP00000029462	66.6205	56.5097
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	30.4348	19.94	erpetoichthys_calabaricus	ENSECRP00000012159	33.9465	22.2408
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	10.7946	7.04648	ciona_savignyi	ENSCSAVP00000008057	48.3221	31.5436
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	58.4708	48.4258	oncorhynchus_tshawytscha	ENSOTSP00005033566	60.3715	50
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	48.5757	39.1304	oncorhynchus_tshawytscha	ENSOTSP00005028425	60.3352	48.6034
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	46.4768	35.982	paramormyrops_kingsleyae	ENSPKIP00000010910	48.6656	37.6766
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	54.5727	43.928	pygocentrus_nattereri	ENSPNAP00000025968	60.7679	48.9149
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	44.9775	35.5322	scleropages_formosus	ENSSFOP00015032197	48.5437	38.3495
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	51.4243	39.8801	sinocyclocheilus_grahami	ENSSGRP00000102402	59.2401	45.9413
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	63.7181	53.6732	hucho_hucho	ENSHHUP00000085887	64.006	53.9157
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	68.6657	56.9715	hucho_hucho	ENSHHUP00000043623	65.8046	54.5977
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	52.7736	42.7286	denticeps_clupeoides	ENSDCDP00000031817	58.2781	47.1854
ENSCVAG00000012483	cyprinodon_variegatus	ENSCVAP00000026722	52.6237	40.9295	cyprinus_carpio_carpio	ENSCCRP00000130111	60.6218	47.1503

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression