RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCVAG00000005939	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	8976 bases	Strand	Minus strand
Position	KL652601.1 : 5230 - 14205	RNA binding domain	zf-CCHC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCVAP00000022935	zf-CCHC	PF00098	0.00032	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCVAT00000008043	2565	854aa	ENSCVAP00000022935

Gene Model

Click here to download ENSCVAG00000005939's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCVAG00000005939's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000011918	32.0557	20.9059	cyprinodon_variegatus	ENSCVAP00000022935	10.7728	7.02576
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000031265	24.9275	13.3333	cyprinodon_variegatus	ENSCVAP00000022935	10.0703	5.38642
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000010936	27.577	15.3949	cyprinodon_variegatus	ENSCVAP00000022935	24.1218	13.466
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000012166	27.6476	15.1828	cyprinodon_variegatus	ENSCVAP00000022935	34.5433	18.9696
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000031926	31.4039	17.2414	cyprinodon_variegatus	ENSCVAP00000022935	29.8595	16.3934
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000031712	31.5594	17.9455	cyprinodon_variegatus	ENSCVAP00000022935	29.8595	16.9789
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022189	25.7453	14.4986	cyprinodon_variegatus	ENSCVAP00000022935	22.2482	12.5293
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000011182	16.4274	9.51621	cyprinodon_variegatus	ENSCVAP00000022935	36.1827	20.9602
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000008266	30.5019	17.3745	cyprinodon_variegatus	ENSCVAP00000022935	9.25059	5.26932
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000003905	36.5759	20.2335	cyprinodon_variegatus	ENSCVAP00000022935	11.007	6.08899
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000012085	35	20.7692	cyprinodon_variegatus	ENSCVAP00000022935	10.6557	6.32318
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000029874	23.3871	11.2903	cyprinodon_variegatus	ENSCVAP00000022935	6.79157	3.27869
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000010068	26.462	14.3275	cyprinodon_variegatus	ENSCVAP00000022935	21.1944	11.4754
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000030793	34.5109	20.1087	cyprinodon_variegatus	ENSCVAP00000022935	14.8712	8.66511
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000008643	24.8538	13.4503	cyprinodon_variegatus	ENSCVAP00000022935	19.9063	10.7728
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000004656	23.7624	13.2956	cyprinodon_variegatus	ENSCVAP00000022935	19.6721	11.007
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000023739	29.0323	13.4409	cyprinodon_variegatus	ENSCVAP00000022935	18.9696	8.7822
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000028083	27.4686	13.465	cyprinodon_variegatus	ENSCVAP00000022935	17.9157	8.7822
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000027218	28.9145	15.562	cyprinodon_variegatus	ENSCVAP00000022935	35.2459	18.9696
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000009763	33.7093	16.416	cyprinodon_variegatus	ENSCVAP00000022935	31.4988	15.3396
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000008903	39.6745	24.0081	cyprinodon_variegatus	ENSCVAP00000022935	45.6674	27.6347
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000019920	30.3502	15.9533	cyprinodon_variegatus	ENSCVAP00000022935	18.267	9.60187
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000018368	31.25	17.8354	cyprinodon_variegatus	ENSCVAP00000022935	24.0047	13.7002
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000016746	29.813	18.1518	cyprinodon_variegatus	ENSCVAP00000022935	31.733	19.3208
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000007576	30.3846	15	cyprinodon_variegatus	ENSCVAP00000022935	9.25059	4.56674
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000010837	33.4797	17.124	cyprinodon_variegatus	ENSCVAP00000022935	35.7143	18.267
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000011528	25.3078	11.6279	cyprinodon_variegatus	ENSCVAP00000022935	21.6628	9.95316
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000014391	20.4819	10.6024	cyprinodon_variegatus	ENSCVAP00000022935	9.95316	5.15223
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000011228	43.1818	24.3506	cyprinodon_variegatus	ENSCVAP00000022935	15.5738	8.7822
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000017345	28.3451	15.1408	cyprinodon_variegatus	ENSCVAP00000022935	18.8525	10.0703
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000028286	19.7211	9.66136	cyprinodon_variegatus	ENSCVAP00000022935	23.185	11.3583
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000020317	34.4751	20.442	cyprinodon_variegatus	ENSCVAP00000022935	36.534	21.6628
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000016146	30.1822	15.0342	cyprinodon_variegatus	ENSCVAP00000022935	31.0304	15.4567
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022938	29.1667	14.7727	cyprinodon_variegatus	ENSCVAP00000022935	9.01639	4.56674
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000028633	32.0624	18.5442	cyprinodon_variegatus	ENSCVAP00000022935	21.6628	12.5293
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000020014	31.6258	18.931	cyprinodon_variegatus	ENSCVAP00000022935	16.6276	9.95316
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000023611	31.4775	17.5589	cyprinodon_variegatus	ENSCVAP00000022935	17.2131	9.60187
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000006226	34.1826	19.4268	cyprinodon_variegatus	ENSCVAP00000022935	37.7049	21.4286
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000001084	53.8136	40.4661	cyprinodon_variegatus	ENSCVAP00000022935	59.4848	44.7307
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000001122	56.1644	40.6744	cyprinodon_variegatus	ENSCVAP00000022935	62.4122	45.1991
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000020453	55.3684	40.4211	cyprinodon_variegatus	ENSCVAP00000022935	61.5925	44.9649
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000004462	53.656	37.6931	cyprinodon_variegatus	ENSCVAP00000022935	61.007	42.8571
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000020509	55.9162	39.5812	cyprinodon_variegatus	ENSCVAP00000022935	62.5293	44.2623
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000007560	45.3027	28.3925	cyprinodon_variegatus	ENSCVAP00000022935	50.8197	31.8501

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	22.1311	17.096	poecilia_reticulata	ENSPREP00000024802	72.973	56.3707
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	63.3489	46.2529	xiphophorus_maculatus	ENSXMAP00000039098	57.6145	42.066
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	64.7541	51.7564	fundulus_heteroclitus	ENSFHEP00000008365	59.7192	47.7322
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	59.4848	44.7307	oreochromis_niloticus	ENSONIP00000067651	54.8004	41.2082
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	61.2412	44.4965	sparus_aurata	ENSSAUP00010017449	55.2854	40.1691
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	63.7002	46.8384	lates_calcarifer	ENSLCAP00010013195	57.0231	41.9287
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.7635	45.5504	poecilia_latipinna	ENSPLAP00000015825	57.7586	41.9181
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	58.6651	43.7939	seriola_dumerili	ENSSDUP00000002597	55.6667	41.5556
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.8806	46.6042	acanthochromis_polyacanthus	ENSAPOP00000001539	56.5263	41.8947
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	59.3677	44.1452	anabas_testudineus	ENSATEP00000017985	54.5161	40.5376
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.0609	45.5504	anabas_testudineus	ENSATEP00000062694	54.8654	40.2691
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.0609	45.5504	anabas_testudineus	ENSATEP00000062527	54.8654	40.2691
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.8806	45.9016	anabas_testudineus	ENSATEP00000018128	53.2738	38.8889
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	63.8173	48.5948	dicentrarchus_labrax	ENSDLAP00005045341	56.8894	43.3194
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	61.5925	47.1897	amphilophus_citrinellus	ENSACIP00000007007	55.6025	42.6004
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	56.7916	36.1827	tetraodon_nigroviridis	ENSTNIP00000008068	51.6507	32.9073
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.2951	47.1897	stegastes_partitus	ENSSPAP00000019552	56.059	42.4658
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.7635	46.1358	larimichthys_crocea	ENSLCRP00005002459	56.4211	41.4737
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	59.3677	38.993	takifugu_rubripes	ENSTRUP00000055753	51.006	33.501
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.5293	46.4871	amphiprion_percula	ENSAPEP00000016155	56.3291	41.8776
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	53.7471	38.8759	labrus_bergylta	ENSLBEP00000034383	50	36.1656
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	62.4122	46.6042	amphiprion_ocellaris	ENSAOCP00000014650	56.4619	42.161
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	61.4754	46.1358	mastacembelus_armatus	ENSMAMP00000032832	55.1471	41.3866
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	63.9344	46.2529	nothobranchius_furzeri	ENSNFUP00015029419	58.5837	42.382
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	64.5199	48.5948	kryptolebias_marmoratus	ENSKMAP00000029640	57.7568	43.501
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	64.1686	46.9555	kryptolebias_marmoratus	ENSKMAP00000029612	57.6842	42.2105
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	64.7541	48.9461	kryptolebias_marmoratus	ENSKMAP00000029692	57.6642	43.5871
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	63.2318	47.4239	kryptolebias_marmoratus	ENSKMAP00000029565	57.754	43.3155
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	64.9883	47.3068	kryptolebias_marmoratus	ENSKMAP00000029730	58.1152	42.3037
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	63.2318	46.7213	sander_lucioperca	ENSSLUP00000041257	43.2692	31.9712
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	63.8173	46.7213	sander_lucioperca	ENSSLUP00000040695	56.5353	41.39
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	61.8267	46.1358	seriola_lalandi_dorsalis	ENSSLDP00000015507	55.288	41.2565
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	31.733	15.6909	drosophila_melanogaster	FBpp0077898	30.1111	14.8889
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	59.0164	40.7494	gadus_morhua	ENSGMOP00000046395	53.1085	36.6702
ENSCVAG00000005939	cyprinodon_variegatus	ENSCVAP00000022935	56.5574	38.6417	gadus_morhua	ENSGMOP00000068683	51.6026	35.2564

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression