RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCVAG00000005640	Gene ID	107086521	Accession	-
Symbol		Alias	-	Full Name	zinc finger CCHC-type containing 2
Status	Confidence	Length	22876 bases	Strand	Minus strand
Position	KL652655.1 : 1094262 - 1117137	RNA binding domain	zf-CCHC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCVAP00000004344	zf-CCHC	PF00098	4.5e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCVAT00000008485	6200	1054aa	ENSCVAP00000004344

Gene Model

Click here to download ENSCVAG00000005640's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCVAG00000005640's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000027479	29.136	19.8529	cyprinodon_variegatus	ENSCVAP00000004344	30.0759	20.4934

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	82.1632	76.0911	poecilia_reticulata	ENSPREP00000017331	81.6211	75.5891
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	82.4478	75.9013	xiphophorus_maculatus	ENSXMAP00000029157	81.8267	75.3296
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	22.5806	19.5446	fundulus_heteroclitus	ENSFHEP00000026267	71.4715	61.8619
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	51.7078	41.4611	oryzias_latipes	ENSORLP00000005199	65.4262	52.461
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	21.4421	18.4061	cyclopterus_lumpus	ENSCLMP00005041910	66.8639	57.3965
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	71.4421	60.7211	oreochromis_niloticus	ENSONIP00000065088	69.0192	58.6618
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	78.0835	68.5958	sparus_aurata	ENSSAUP00010063290	71.3172	62.6516
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	71.4421	60.7211	haplochromis_burtoni	ENSHBUP00000028803	69.337	58.9319
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	71.3473	60.5313	astatotilapia_calliptera	ENSACLP00000006674	69.5652	59.0194
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	79.3169	69.1651	lates_calcarifer	ENSLCAP00010002507	70.9075	61.8321
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	82.4478	76.6603	poecilia_latipinna	ENSPLAP00000020769	81.5962	75.8685
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	50.9488	47.0588	poecilia_formosa	ENSPFOP00000027377	77.7135	71.78
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	68.2163	57.8748	seriola_dumerili	ENSSDUP00000003098	68.0871	57.7652
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	19.0702	16.3188	acanthochromis_polyacanthus	ENSAPOP00000012500	72.043	61.6487
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	23.2448	19.9241	anabas_testudineus	ENSATEP00000066473	68.0556	58.3333
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	77.704	67.4573	dicentrarchus_labrax	ENSDLAP00005006111	71.5284	62.0961
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	59.0133	51.4231	scophthalmus_maximus	ENSSMAP00000006660	67.462	58.7852
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	14.8956	12.2391	amphilophus_citrinellus	ENSACIP00000018821	75.8454	62.3188
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	73.7192	62.8083	oryzias_melastigma	ENSOMEP00000000253	69.7487	59.4255
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	15.37	13.093	neolamprologus_brichardi	ENSNBRP00000022436	73.9726	63.0137
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	11.4801	9.29791	tetraodon_nigroviridis	ENSTNIP00000000295	62.6943	50.7772
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	77.5142	67.9317	stegastes_partitus	ENSSPAP00000014618	70.7359	61.9913
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	78.3681	68.3112	larimichthys_crocea	ENSLCRP00005012209	70.7798	61.6967
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	70.1139	58.5389	hippocampus_comes	ENSHCOP00000024511	66.6968	55.6859
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	72.4858	61.8596	cynoglossus_semilaevis	ENSCSEP00000011144	61.3655	52.3695
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	77.7989	68.0266	amphiprion_percula	ENSAPEP00000016924	72.5022	63.3952
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	71.2524	60.2467	maylandia_zebra	ENSMZEP00005020662	69.4727	58.7419
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	71.0626	59.7723	betta_splendens	ENSBSLP00000051927	67.2956	56.6038
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	52.4668	44.3074	pundamilia_nyererei	ENSPNYP00000028157	67.7696	57.2304
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	14.9905	12.9981	pundamilia_nyererei	ENSPNYP00000028195	76.699	66.5049
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	57.1157	49.241	amphiprion_ocellaris	ENSAOCP00000028878	69.7567	60.139
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	64.7059	53.7951	oryzias_javanicus	ENSOJAP00000044899	61.3861	51.0351
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	72.296	60.1518	oryzias_sinensis	ENSOSIP00000000686	68.6487	57.1171
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	72.296	59.6774	mastacembelus_armatus	ENSMAMP00000032235	66.0312	54.5061
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	17.1727	14.9905	sander_lucioperca	ENSSLUP00000047691	73.5772	64.2276
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	75.9962	65.6546	cottoperca_gobio	ENSCGOP00000055725	67.8239	58.5944
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	79.5066	69.0702	seriola_lalandi_dorsalis	ENSSLDP00000008774	71.9931	62.543
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	22.296	13.2827	caenorhabditis_elegans	C36B1.8b.1	22.3384	13.308
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	56.7362	44.0228	lepisosteus_oculatus	ENSLOCP00000012286	55.0138	42.6863
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	43.074	33.3017	clupea_harengus	ENSCHAP00000050747	55.164	42.6488
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	37.7609	27.8937	danio_rerio	ENSDARP00000120915	50.8301	37.5479
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	42.0304	31.2144	carassius_auratus	ENSCARP00000045532	51.6919	38.3897
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	42.315	31.8786	carassius_auratus	ENSCARP00000085174	51.5607	38.8439
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	15.6546	12.1442	carassius_auratus	ENSCARP00000070217	64.2023	49.8054
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	27.704	20.019	astyanax_mexicanus	ENSAMXP00000030045	46.4229	33.5453
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	12.8083	11.2903	astyanax_mexicanus	ENSAMXP00000029485	74.1758	65.3846
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	43.074	33.112	ictalurus_punctatus	ENSIPUP00000014615	50.1657	38.5635
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	15.5598	12.2391	electrophorus_electricus	ENSEEEP00000043407	62.5954	49.2366
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	62.9032	48.9564	esox_lucius	ENSELUP00000042755	56.57	44.0273
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	64.8956	51.0436	oncorhynchus_kisutch	ENSOKIP00005041393	57.5273	45.2481
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	58.0645	43.833	oncorhynchus_kisutch	ENSOKIP00005023639	56.25	42.4632
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	22.8653	17.2676	oncorhynchus_mykiss	ENSOMYP00000049926	50.2083	37.9167
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	20.778	17.2676	oncorhynchus_mykiss	ENSOMYP00000118403	61.6901	51.2676
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	60.1518	45.8254	oncorhynchus_mykiss	ENSOMYP00000071739	59.3633	45.2247
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	61.2903	46.6793	salmo_salar	ENSSSAP00000127028	58.3032	44.4043
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	61.0057	47.5332	salmo_salar	ENSSSAP00000110057	57.9279	45.1351
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	20.5882	15.8444	salmo_trutta	ENSSTUP00000069964	63.8235	49.1176
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	32.6376	24.0987	salmo_trutta	ENSSTUP00000069916	51.9637	38.3686
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	64.9905	51.3283	salmo_trutta	ENSSTUP00000015968	60.0877	47.4561
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	27.2296	19.1651	erpetoichthys_calabaricus	ENSECRP00000008464	47.2817	33.2784
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	22.3909	16.7932	oncorhynchus_tshawytscha	ENSOTSP00005026752	50.7527	38.0645
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	21.3472	16.888	oncorhynchus_tshawytscha	ENSOTSP00005026750	60.4839	47.8495
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	63.852	49.9051	oncorhynchus_tshawytscha	ENSOTSP00005083508	55.2545	43.1856
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	59.2979	45.9203	paramormyrops_kingsleyae	ENSPKIP00000014699	58.0316	44.9396
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	54.2695	41.8406	paramormyrops_kingsleyae	ENSPKIP00000014988	54.9472	42.3631
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	54.0797	40.4175	pygocentrus_nattereri	ENSPNAP00000036581	53.3209	39.8503
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	40.3226	30.3605	scleropages_formosus	ENSSFOP00015016323	54.6976	41.184
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	53.6053	40.038	scleropages_formosus	ENSSFOP00015061052	54.8544	40.9709
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	75.7116	64.5161	myripristis_murdjan	ENSMMDP00005056054	68.6747	58.5198
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	14.0417	11.2903	sinocyclocheilus_grahami	ENSSGRP00000104963	55.6391	44.7368
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	64.7059	50.6641	hucho_hucho	ENSHHUP00000033614	60.0352	47.007
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	20.019	16.3188	hucho_hucho	ENSHHUP00000013270	62.2419	50.7375
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	24.2884	18.1214	hucho_hucho	ENSHHUP00000009826	53.2225	39.7089
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	56.3567	43.7381	denticeps_clupeoides	ENSDCDP00000058810	57.3359	44.4981
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	19.3548	13.852	cyprinus_carpio_carpio	ENSCCRP00000075388	45.4343	32.5167
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	14.8956	11.6698	cyprinus_carpio_carpio	ENSCCRP00000108108	60.6178	47.4903
ENSCVAG00000005640	cyprinodon_variegatus	ENSCVAP00000004344	28.3681	20.5882	cyprinus_carpio_carpio	ENSCCRP00000173127	48.3037	35.0565

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression