RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSCUSG00005005873	Gene ID		Accession	-
Symbol		Alias	-	Full Name	splicing factor 3a subunit 3
Status	Confidence	Length	6321 bases	Strand	Plus strand
Position	26 : 3169816 - 3176136	RNA binding domain	SF3a60_Prp9_C , SF3a60_bindingd
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCUSP00005009217	SF3a60_Prp9_C	PF11931	1.6e-55	1
ENSCUSP00005009217	SF3a60_bindingd	PF12108	1.1e-15	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCUST00005009597	1722	501aa	ENSCUSP00005009217

Gene Model

Click here to download ENSCUSG00005005873's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCUSG00005005873's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCUSG00005005873

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCUSG00005005873

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression