RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCSEG00000020119	Gene ID	103395556	Accession	-
Symbol	zgc	Alias	-	Full Name	U2 snRNP-associated SURP motif-containing protein-like
Status	Confidence	Length	10249 bases	Strand	Minus strand
Position	19 : 15619199 - 15629447	RNA binding domain	RRM_1 , Surp , cwf21 , CID
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCSEP00000031444	RRM_1	PF00076	7.3e-10	1
ENSCSEP00000031444	Surp	PF01805	7.4e-17	2
ENSCSEP00000031444	cwf21	PF08312	1.3e-09	3
ENSCSEP00000031444	CID	PF04818	4.5e-10	4
ENSCSEP00000031428	RRM_1	PF00076	7.8e-10	1
ENSCSEP00000031428	Surp	PF01805	8.1e-17	2
ENSCSEP00000031428	cwf21	PF08312	1.4e-09	3
ENSCSEP00000031428	CID	PF04818	6.6e-10	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
zgc:163098-201	ENSCSET00000031837	2772	882aa	ENSCSEP00000031428
zgc:163098-202	ENSCSET00000031853	2463	820aa	ENSCSEP00000031444

Gene Model

Click here to download ENSCSEG00000020119's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCSEG00000020119's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000023850	61.2868	48.0916	cynoglossus_semilaevis	ENSCSEP00000031428	63.7188	50

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	82.8798	72.6757	fundulus_heteroclitus	ENSFHEP00000029468	84.3137	73.9331
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	84.4671	73.356	poecilia_reticulata	ENSPREP00000034057	84.6591	73.5227
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	84.0136	73.356	xiphophorus_maculatus	ENSXMAP00000012704	85.3687	74.5392
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.4172	66.78	cyclopterus_lumpus	ENSCLMP00005027262	86.2996	75.4161
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	80.839	71.2018	oreochromis_niloticus	ENSONIP00000006612	77.6688	68.4096
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	85.2608	76.644	haplochromis_burtoni	ENSHBUP00000020361	86.3375	77.6119
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	83.7868	74.1497	oryzias_latipes	ENSORLP00000035930	85.8304	75.9582
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	85.034	76.3039	astatotilapia_calliptera	ENSACLP00000024533	86.1079	77.2675
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	87.9819	78.3447	sparus_aurata	ENSSAUP00010064398	83.9827	74.7835
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	85.941	78.3447	lates_calcarifer	ENSLCAP00010012856	89.0717	81.1986
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	82.7664	71.7687	cyprinodon_variegatus	ENSCVAP00000026639	84.1984	73.0104
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	88.7755	79.5918	dicentrarchus_labrax	ENSDLAP00005003661	87	78
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	83.9002	74.1497	oryzias_melastigma	ENSOMEP00000022550	85.8469	75.8701
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	81.746	73.6961	neolamprologus_brichardi	ENSNBRP00000027847	85.8333	77.381
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	84.0136	73.1292	poecilia_formosa	ENSPFOP00000012080	85.3687	74.3088
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	80.1587	70.068	kryptolebias_marmoratus	ENSKMAP00000013038	82.2093	71.8605
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	80.3855	71.9955	cottoperca_gobio	ENSCGOP00000046017	84.9102	76.0479
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	82.7664	73.0159	scophthalmus_maximus	ENSSMAP00000022102	82.2999	72.6043
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.8708	68.3673	amphilophus_citrinellus	ENSACIP00000015457	84.6442	75.2809
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	84.127	73.356	poecilia_latipinna	ENSPLAP00000006168	85.4839	74.5392
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	78.9116	71.8821	anabas_testudineus	ENSATEP00000023959	84.3636	76.8485
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	87.6417	78.0045	acanthochromis_polyacanthus	ENSAPOP00000004005	87.5425	77.9162
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	83.1066	71.9955	gasterosteus_aculeatus	ENSGACP00000027383	78.902	68.3531
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	34.8073	31.0658	hippocampus_comes	ENSHCOP00000017777	78.9203	70.437
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.644	67.2336	nothobranchius_furzeri	ENSNFUP00015013575	82.7417	72.5826
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	85.034	76.3039	maylandia_zebra	ENSMZEP00005022441	86.1079	77.2675
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	87.7551	77.8912	amphiprion_ocellaris	ENSAOCP00000004983	87.6557	77.8029
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	85.2608	76.1905	mastacembelus_armatus	ENSMAMP00000025339	87.5437	78.2305
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	68.5941	60.5442	sander_lucioperca	ENSSLUP00000039540	81.8674	72.2598
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	87.8685	78.0045	amphiprion_percula	ENSAPEP00000001887	87.769	77.9162
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	30.9524	28.458	betta_splendens	ENSBSLP00000042407	91	83.6667
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	89.5692	82.4263	seriola_lalandi_dorsalis	ENSSLDP00000026238	88.964	81.8694
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	78.4581	70.068	oryzias_sinensis	ENSOSIP00000051947	85.7497	76.5799
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	87.0748	78.0045	stegastes_partitus	ENSSPAP00000001174	87.5713	78.4493
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	37.5283	34.2404	larimichthys_crocea	ENSLCRP00005037017	91.1846	83.1956
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	85.034	76.3039	pundamilia_nyererei	ENSPNYP00000021869	86.1079	77.2675
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	48.4127	30.0454	caenorhabditis_elegans	C07H6.4.1	45.7663	28.403
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	90.0227	82.6531	seriola_dumerili	ENSSDUP00000013672	89.2135	81.9101
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	56.4626	39.7959	drosophila_melanogaster	FBpp0071455	52.0376	36.6771
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	70.6349	60.8844	labrus_bergylta	ENSLBEP00000003348	78.2663	67.4623
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	59.0703	43.1973	ciona_intestinalis	ENSCINP00000033725	60.3708	44.1483
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	49.4331	38.4354	eptatretus_burgeri	ENSEBUP00000005144	52.8485	41.0909
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	57.0295	44.4444	callorhinchus_milii	ENSCMIP00000017787	67.7898	52.8302
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	68.9342	54.8753	latimeria_chalumnae	ENSLACP00000009563	63.7985	50.787
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	73.8095	58.9569	lepisosteus_oculatus	ENSLOCP00000016774	68.5985	54.7945
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	78.2313	64.7392	clupea_harengus	ENSCHAP00000057100	74.7562	61.8635
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.644	63.0385	danio_rerio	ENSDARP00000101139	77.3455	63.6156
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	75.5102	62.1315	carassius_auratus	ENSCARP00000049276	76.8166	63.2065
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	73.356	59.7506	carassius_auratus	ENSCARP00000023931	74.2824	60.5052
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	70.6349	56.3492	astyanax_mexicanus	ENSAMXP00000005209	76.2546	60.8323
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	74.4898	60.4308	ictalurus_punctatus	ENSIPUP00000029131	75.7785	61.4764
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	72.7891	58.6168	electrophorus_electricus	ENSEEEP00000014477	75.9763	61.1834
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	79.5918	67.4603	esox_lucius	ENSELUP00000038141	78.9651	66.9291
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	79.0249	67.8005	oncorhynchus_kisutch	ENSOKIP00005115643	76.4254	65.5702
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	80.4989	67.9138	oncorhynchus_kisutch	ENSOKIP00005063636	74.1902	62.5914
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	80.4989	67.9138	oncorhynchus_mykiss	ENSOMYP00000027806	74.4235	62.7883
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	79.4785	68.254	oncorhynchus_mykiss	ENSOMYP00000138303	73.4801	63.1027
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	79.5918	68.1406	salmo_salar	ENSSSAP00000081304	78.7879	67.4523
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	77.3243	64.7392	salmo_salar	ENSSSAP00000056723	75.6098	63.3038
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	80.3855	67.9138	salmo_trutta	ENSSTUP00000069875	75.5864	63.8593
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	77.8912	67.0068	salmo_trutta	ENSSTUP00000100926	81.0142	69.6934
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	74.3764	63.3787	gadus_morhua	ENSGMOP00000000984	81.4907	69.441
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	74.6032	58.7302	erpetoichthys_calabaricus	ENSECRP00000016079	72.7072	57.2376
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	73.2426	59.7506	pygocentrus_nattereri	ENSPNAP00000017465	74.942	61.1369
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	59.7506	44.3311	ciona_savignyi	ENSCSAVP00000015403	60.7143	45.0461
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	80.3855	68.1406	hucho_hucho	ENSHHUP00000008746	78.8654	66.8521
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	66.78	57.9365	hucho_hucho	ENSHHUP00000058415	72.9864	63.3209
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	80.4989	67.9138	oncorhynchus_tshawytscha	ENSOTSP00005072785	74.1902	62.5914
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	79.3651	67.9138	oncorhynchus_tshawytscha	ENSOTSP00005009484	75.0268	64.2015
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	32.6531	28.0045	sinocyclocheilus_grahami	ENSSGRP00000059348	79.1209	67.8571
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	34.127	29.7052	sinocyclocheilus_grahami	ENSSGRP00000067362	82.6923	71.978
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	78.3447	64.7392	scleropages_formosus	ENSSFOP00015007603	77.6404	64.1573
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.1905	63.2653	cyprinus_carpio_carpio	ENSCCRP00000178651	76.3636	63.4091
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.3039	62.6984	cyprinus_carpio_carpio	ENSCCRP00000168636	76.7389	63.0559
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	78.6848	64.966	paramormyrops_kingsleyae	ENSPKIP00000041361	77.9775	64.382
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.3039	66.3265	myripristis_murdjan	ENSMMDP00005006786	81.9732	71.2546
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.3039	62.4717	denticeps_clupeoides	ENSDCDP00000056836	78.1649	63.9954
ENSCSEG00000020119	cynoglossus_semilaevis	ENSCSEP00000031428	76.3039	62.4717	denticeps_clupeoides	ENSDCDP00000056600	78.1649	63.9954

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression