Description

Ensembl ID ENSCSAVG00000000160 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 10914 bases Strand Minus strand
Position reftig_1577 : 5629 - 16542 RNA binding domain MMR_HSR1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCSAVP00000000291 MMR_HSR1 PF01926 5.9e-05 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCSAVT00000000294 1408 214aa ENSCSAVP00000000291
- ENSCSAVT00000000295 645 213aa ENSCSAVP00000000292
- ENSCSAVT00000000296 1554 518aa ENSCSAVP00000000293

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000001179132.727316.7273ciona_savignyiENSCSAVP0000000029317.37458.88031
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000571994.746793.9962ciona_savignyiENSCSAVP0000000029397.490396.7181
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000002006142.857123.4542ciona_savignyiENSCSAVP0000000029338.803121.2355

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029334.942116.6023caenorhabditis_elegansC53D6.6.229.430913.9837
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029334.169919.305ciona_intestinalisENSCINP0000000237433.522718.9394
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.505823.7452ciona_intestinalisENSCINP0000001520433.593819.2188
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029347.683428.1853petromyzon_marinusENSPMAP0000000883739.331223.2484
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.733623.3591callorhinchus_miliiENSCMIP0000000915919.962211.4475
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.841731.2741latimeria_chalumnaeENSLACP0000000501848.098930.7985
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029347.490328.1853latimeria_chalumnaeENSLACP0000000177648.425228.7402
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029345.559826.6409latimeria_chalumnaeENSLACP0000000222846.18427.0059
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029345.559828.5714latimeria_chalumnaeENSLACP0000002033847.773329.9595
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.436322.5869danio_rerioENSDARP0000014115123.100612.0123
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029350.772230.695carassius_auratusENSCARP0000011140945.423127.4611
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029351.158331.6602carassius_auratusENSCARP0000006578146.654928.8732
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029346.718128.1853astyanax_mexicanusENSAMXP0000005446538.412723.1746
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.505822.2008ictalurus_punctatusENSIPUP0000003587824.076112.8779
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029333.976817.3745electrophorus_electricusENSEEEP0000000955422.827511.6732
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.961420.8494esox_luciusENSELUP0000002003922.511.7391
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.926621.0425oncorhynchus_kisutchENSOKIP0000511421923.793512.2334
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.575320.2703oncorhynchus_kisutchENSOKIP0000511457222.577111.5639
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.768320.0772oncorhynchus_mykissENSOMYP0000008626928.027214.1497
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.312723.5521oncorhynchus_mykissENSOMYP0000004773841.634223.7354
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.733620.8494oncorhynchus_mykissENSOMYP0000002955924.169512.3711
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029344.015426.0618salmo_salarENSSSAP0000016121138.19122.6131
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.154420.2703salmo_salarENSSSAP0000009957222.832111.5258
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.733621.0425salmo_salarENSSSAP0000001021923.681312.2334
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.243225.2896salmo_salarENSSSAP0000016631937.333321.8333
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.891924.5174salmo_truttaENSSTUP0000000907742.217924.7082
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.154420.4633salmo_truttaENSSTUP0000007336122.832111.6356
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.540520.8494salmo_truttaENSSTUP000000735372412.3429
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.575324.7104gadus_morhuaENSGMOP0000000037248.122130.0469
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029335.328222.5869gadus_morhuaENSGMOP0000005743941.780826.7123
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.698825.0965poecilia_reticulataENSPREP0000000971537.961322.8471
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.629326.2548xiphophorus_maculatusENSXMAP0000002230835.202521.1838
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.629327.7992oryzias_latipesENSORLP0000004098243.129827.4809
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029320.463312.9344oreochromis_niloticusENSONIP0000004725337.19323.5088
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029346.525130.3089oreochromis_niloticusENSONIP0000007695246.435530.2505
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029347.876431.0811oreochromis_niloticusENSONIP0000004504140.325226.1789
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029337.644825.0965oreochromis_niloticusENSONIP0000006751345.667430.445
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029336.872624.3243oreochromis_niloticusENSONIP0000006236551.902234.2391
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029351.158334.1699oreochromis_niloticusENSONIP0000004582742.264828.2297
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029338.6125.2896oreochromis_niloticusENSONIP0000006130547.961631.4149
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.455630.695astatotilapia_callipteraENSACLP0000003497440.81325.8537
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.648631.0811astatotilapia_callipteraENSACLP0000002419946.238529.5413
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029338.030925.6757sparus_aurataENSSAUP0001001538946.904831.6667
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.262531.8533sparus_aurataENSSAUP0001001538446.554930.7263
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.822423.3591chrysemys_picta_belliiENSCPBP0000001186231.010916.5301
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029344.208523.166sphenodon_punctatusENSSPUP0000000558031.284216.3934
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.243222.973laticauda_laticaudataENSLLTP0000000723534.250818.1957
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029342.27823.166notechis_scutatusENSNSUP0000001926633.537518.3767
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.243223.166pseudonaja_textilisENSPTXP0000002763930.601116.3934
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.961421.8147anas_platyrhynchos_platyrhynchosENSAPLP0000003117830.174916.4723
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029342.47126.2548dicentrarchus_labraxENSDLAP0000502824244.265627.3642
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.154420.4633erpetoichthys_calabaricusENSECRP0000003342327.118613.8201
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029342.27823.3591anolis_carolinensisENSACAP0000003399527.20515.0311
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029316.21629.07336neolamprologus_brichardiENSNBRP0000001949635.593219.9153
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.891922.5869naja_najaENSNNAP0000002394235.573819.1803
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029347.297328.7645kryptolebias_marmoratusENSKMAP0000000146440.562924.6689
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.455629.7297kryptolebias_marmoratusENSKMAP0000001483740.680724.9595
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.382225.4826seriola_dumeriliENSSDUP0000001168832.797421.2219
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029338.41719.4981pygocentrus_nattereriENSPNAP0000003028230.615415.5385
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029332.818519.112poecilia_formosaENSPFOP0000000087337.777822
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.347523.7452poecilia_latipinnaENSPLAP0000001585636.474721.466
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029349.806930.695acanthochromis_polyacanthusENSAPOP0000003067641.082825.3185
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.069531.4672acanthochromis_polyacanthusENSAPOP0000002705045.272729.6364
ENSCSAVG00000000160ciona_savignyiENSCSAVP000000002935031.0811acanthochromis_polyacanthusENSAPOP0000002042839.481724.5427
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.069531.4672acanthochromis_polyacanthusENSAPOP0000000807645.272729.6364
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.069531.4672acanthochromis_polyacanthusENSAPOP0000001638240.096626.248
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.698821.6216anser_brachyrhynchusENSABRP0000002699630.422515.7746
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029344.980723.5521struthio_camelus_australisENSSCUP0000001218931.066716.2667
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.926621.0425oncorhynchus_tshawytschaENSOTSP0000500513322.869511.7584
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.891924.9035oncorhynchus_tshawytschaENSOTSP0000500535042.716525.3937
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.768320.4633oncorhynchus_tshawytschaENSOTSP0000510297822.662311.6612
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.926621.2355hucho_huchoENSHHUP0000008250622.746811.8026
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029337.644819.6911hucho_huchoENSHHUP0000000472526.494613.8587
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029342.664122.5869sinocyclocheilus_grahamiENSSGRP0000006048321.968211.6302
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.575320.6564sinocyclocheilus_grahamiENSSGRP0000000739828.954815.113
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029349.420829.9228stegastes_partitusENSSPAP0000001285440.570524.5642
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.822423.5521terrapene_carolina_triunguisENSTMTP0000000522431.010916.6667
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.382225.2896scophthalmus_maximusENSSMAP0000006530346.258529.7052
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029337.644821.6216denticeps_clupeoidesENSDCDP0000001883823.636413.5758
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029337.644821.6216denticeps_clupeoidesENSDCDP0000001455027.426215.7525
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029347.876431.2741leptobrachium_leishanenseENSLLEP0000000244445.588229.7794
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.926626.6409pundamilia_nyerereiENSPNYP0000002792238.405825
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029329.536719.112gasterosteus_aculeatusENSGACP0000001925156.666736.6667
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029338.030925.6757gasterosteus_aculeatusENSGACP0000000287645.496530.7159
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029336.872625.0965gasterosteus_aculeatusENSGACP0000000212445.260730.8057
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029341.891926.2548gasterosteus_aculeatusENSGACP0000000100945.588228.5714
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029340.733627.6062gasterosteus_aculeatusENSGACP0000001925247.415732.1348
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029336.872625.0965gasterosteus_aculeatusENSGACP0000000238044.522130.303
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029338.41726.0618gasterosteus_aculeatusENSGACP0000000129946.495331.5421
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029344.015422.2008aquila_chrysaetos_chrysaetosENSACCP0002002088031.190215.7319
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029320.656411.0039aquila_chrysaetos_chrysaetosENSACCP0002002034233.753917.9811
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029335.521221.0425labrus_bergyltaENSLBEP0000003036837.398422.1545
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029339.575325.2896amphiprion_perculaENSAPEP0000000231740.27525.7367
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029346.718129.7297amphiprion_perculaENSAPEP0000000386846.271529.4455
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029344.787626.834amphiprion_perculaENSAPEP0000001054637.662322.5649
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029338.41720.0772scleropages_formosusENSSFOP0001504754129.051115.1825
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029342.664121.8147paramormyrops_kingsleyaeENSPKIP0000003959024.528312.5416
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029349.034732.8185nothobranchius_furzeriENSNFUP0001501914249.129632.882
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029348.262530.5019amphiprion_ocellarisENSAOCP0000000402134.674121.914
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029351.158331.4672cyprinus_carpio_carpioENSCCRP0000013438240.519924.9235
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029342.27823.166salvator_merianaeENSSMRP0000000901529.836516.3488
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029344.015423.5521gopherus_evgoodeiENSGEVP0000502145131.147516.6667
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029342.27822.2008chelonoidis_abingdoniiENSCABP0000000514733.848517.7743
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.822427.027hippocampus_comesENSHCOP0000001193136.553922.5443
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029344.594626.834hippocampus_comesENSHCOP0000001359237.806922.7496
ENSCSAVG00000000160ciona_savignyiENSCSAVP0000000029343.436323.9382podarcis_muralisENSPMRP0000001489930.695816.9168

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression